U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Lix1l limb and CNS expressed 1 like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499677, updated on 27-Nov-2024

    Summary

    Official Symbol
    Lix1lprovided by RGD
    Official Full Name
    limb and CNS expressed 1 likeprovided by RGD
    Primary source
    RGD:1593161
    See related
    EnsemblRapid:ENSRNOG00000021213 AllianceGenome:RGD:1593161
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in autophagosome maturation. Predicted to be active in cytoplasm. Orthologous to human LIX1L (limb and CNS expressed 1 like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Heart (RPKM 183.6), Adrenal (RPKM 135.1) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Lix1l in Genome Data Viewer
    Location:
    2q34
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (186824864..186850761)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (184136018..184161918)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (198726110..198751987)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase III subunit GL Neighboring gene ankyrin repeat domain 34A Neighboring gene high mobility group protein B1-like Neighboring gene RNA binding motif protein 8A Neighboring gene U4 spliceosomal RNA Neighboring gene peroxisomal biogenesis factor 11 beta

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in autophagosome maturation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    LIX1-like protein
    Names
    Lix1 homolog-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001395134.2NP_001382063.1  LIX1-like protein

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/Swiss-Prot
      Q5PQQ7
      UniProtKB/TrEMBL
      A6K378
      Related
      ENSRNOP00000053080.3, ENSRNOT00000056237.5
      Conserved Domains (1) summary
      pfam14954
      Location:87328
      LIX1; Limb expression 1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      186824864..186850761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039102934.2XP_038958862.1  LIX1-like protein isoform X1

      UniProtKB/Swiss-Prot
      Q5PQQ7
      Conserved Domains (1) summary
      pfam14954
      Location:87281
      LIX1; Limb expression 1

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001024303.1: Suppressed sequence

      Description
      NM_001024303.1: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.