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    Cdca7l cell division cycle associated 7 like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 619566, updated on 9-Dec-2024

    Summary

    Official Symbol
    Cdca7lprovided by RGD
    Official Full Name
    cell division cycle associated 7 likeprovided by RGD
    Primary source
    RGD:1564080
    See related
    EnsemblRapid:ENSRNOG00000005410 AllianceGenome:RGD:1564080
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within positive regulation of cell population proliferation. Predicted to be located in cytosol; fibrillar center; and nucleoplasm. Predicted to be active in nucleus. Orthologous to human CDCA7L (cell division cycle associated 7 like). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 139.3), Spleen (RPKM 55.3) and 8 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Cdca7l in Genome Data Viewer
    Location:
    6q33
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (144936885..144982844)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (138793953..138839889)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (145739570..145785607)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene Rap guanine nucleotide exchange factor 5 Neighboring gene uncharacterized LOC134479493 Neighboring gene 60S acidic ribosomal protein P2 pseudogene Neighboring gene small nucleolar RNA SNORA7 Neighboring gene ribosomal protein L32, pseudogene 3 Neighboring gene uncharacterized LOC120093173 Neighboring gene dynein, axonemal, heavy chain 11 Neighboring gene uncharacterized LOC134479494

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in fibrillar center IEA
    Inferred from Electronic Annotation
    more info
     
    located_in fibrillar center ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    cell division cycle-associated 7-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034953.1NP_001030125.1  cell division cycle-associated 7-like protein

      See identical proteins and their annotated locations for NP_001030125.1

      Status: PROVISIONAL

      Source sequence(s)
      BC098734
      UniProtKB/Swiss-Prot
      Q4G059
      UniProtKB/TrEMBL
      A0A0G2K8U6, A6KDM3
      Related
      ENSRNOP00000079873.2, ENSRNOT00000103690.2
      Conserved Domains (1) summary
      pfam10497
      Location:333431
      zf-4CXXC_R1; Zinc-finger domain of monoamine-oxidase A repressor R1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      144936885..144982844
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017594339.3XP_017449828.1  cell division cycle-associated 7-like protein isoform X1

      UniProtKB/TrEMBL
      A0A8I6G5U7