U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Mttp microsomal triglyceride transfer protein [ Rattus norvegicus (Norway rat) ]

    Gene ID: 310900, updated on 9-Dec-2024

    Summary

    Official Symbol
    Mttpprovided by RGD
    Official Full Name
    microsomal triglyceride transfer proteinprovided by RGD
    Primary source
    RGD:1308388
    See related
    EnsemblRapid:ENSRNOG00000010655 AllianceGenome:RGD:1308388
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    MTP
    Summary
    Enables apolipoprotein binding activity and lipid transfer activity. Involved in several processes, including cholesterol homeostasis; lipoprotein metabolic process; and response to calcium ion. Located in basolateral plasma membrane; cell projection membrane; and vesicle. Biomarker of familial hyperlipidemia. Human ortholog(s) of this gene implicated in several diseases, including abetalipoproteinemia; familial hypercholesterolemia; hyperinsulinism; metabolic dysfunction-associated steatotic liver disease; and obesity. Orthologous to human MTTP (microsomal triglyceride transfer protein). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 934.2) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Mttp in Genome Data Viewer
    Location:
    2q43
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (229286501..229327650, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (226613090..226654239, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (243366181..243407608, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102555623 Neighboring gene similar to human chromosome 4 open reading frame 54 Neighboring gene uncharacterized LOC134485978 Neighboring gene tRNA methyltransferase 10A Neighboring gene uncharacterized LOC134485979 Neighboring gene similar to human chromosome 4 open reading frame 17

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables apolipoprotein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables ceramide 1-phosphate transfer activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables cholesterol transfer activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables cholesterol transfer activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables lipid transporter activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables lipid transporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphatidylcholine transfer activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables phosphatidylcholine transfer activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphatidylethanolamine transfer activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables phosphatidylethanolamine transfer activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables phospholipid transfer activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables phospholipid transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein heterodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein-containing complex binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables triglyceride transfer activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables triglyceride transfer activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in ceramide 1-phosphate transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cholesterol homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cholesterol homeostasis IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    acts_upstream_of_or_within cholesterol homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in circadian rhythm ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within establishment of localization in cell ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in intermembrane lipid transfer IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within lipid metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in lipid transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in lipoprotein metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in lipoprotein metabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within lipoprotein metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within lipoprotein transport ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within low-density lipoprotein particle remodeling ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in phospholipid transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in plasma lipoprotein particle assembly ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in plasma lipoprotein particle assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within protein lipidation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein secretion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein secretion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in response to calcium ion IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in sterol transport IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within triglyceride metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in triglyceride transport ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in basolateral plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in basolateral plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in brush border membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in microvillus membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of receptor complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    microsomal triglyceride transfer protein large subunit

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107727.1NP_001101197.1  microsomal triglyceride transfer protein large subunit precursor

      See identical proteins and their annotated locations for NP_001101197.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473952
      UniProtKB/Swiss-Prot
      D4A1W8
      Related
      ENSRNOP00000014630.4, ENSRNOT00000014631.8
      Conserved Domains (1) summary
      cl26969
      Location:28580
      Vitellogenin_N; Lipoprotein amino terminal region

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      229286501..229327650 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)