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    CG6163 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39274, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG6163provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0036155
    Locus tag
    Dmel_CG6163
    See related
    AllianceGenome:FB:FBgn0036155
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG6163
    Summary
    Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG6163 in Genome Data Viewer
    Location:
    68C4-68C4; 3-36 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (11361986..11364885, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (11355086..11357985, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45250 Neighboring gene long non-coding RNA:CR45251 Neighboring gene long non-coding RNA:CR45036 Neighboring gene long non-coding RNA:CR42755 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Female Genetic Contributions to Sperm Competition in Drosophila melanogaster. Chen DS, et al. Genetics, 2019 Jul. PMID 31101677, Free PMC Article
    2. Large neurological component to genetic differences underlying biased sperm use in Drosophila. Chow CY, et al. Genetics, 2013 Jan. PMID 23105014, Free PMC Article
    3. A Drosophila protein-interaction map centered on cell-cycle regulators. Stanyon CA, et al. Genome Biol, 2004. PMID 15575970, Free PMC Article
    4. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article
    5. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of transcription regulator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG6163-PA
    CG6163-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      11361986..11364885 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_140203.1 → NP_648460.1  uncharacterized protein Dmel_CG6163, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648460.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3DN79, Q9VTH8
      Related
      FBpp0075911, FBtr0076181
      Conserved Domains (1) summary
      smart00595
      Location:226 → 316
      MADF; subfamily of SANT domain

    2. NM_001274780.1 → NP_001261709.1  uncharacterized protein Dmel_CG6163, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261709.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3DN79, Q9VTH8
      Conserved Domains (1) summary
      smart00595
      Location:226 → 316
      MADF; subfamily of SANT domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VTH8 Q9VTH8

    Gene LinkOut

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