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    CG5742 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37072, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG5742provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0034304
    Locus tag
    Dmel_CG5742
    See related
    AllianceGenome:FB:FBgn0034304
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5742
    Summary
    Predicted to enable signaling receptor binding activity. Predicted to be involved in protein retention in ER lumen. Predicted to be active in cytoplasm. Is expressed in organism. Orthologous to human ANKRD13C (ankyrin repeat domain 13C). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG5742 in Genome Data Viewer
    Location:
    55B9-55B9; 2-84 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (18148096..18151410, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (14035601..14038915, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene poly(A) binding protein Neighboring gene Essential MCU regulator Neighboring gene adipose Neighboring gene lola like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mobile-phone radiation-induced perturbation of gene-expression profiling, redox equilibrium and sporadic-apoptosis control in the ovary of Drosophila melanogaster. Manta AK, et al. Fly (Austin), 2017 Apr 3. PMID 27960592, Free PMC Article
    2. Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization. Menoret D, et al. Genome Biol, 2013 Aug 23. PMID 23972280, Free PMC Article
    3. A genetic screen and transcript profiling reveal a shared regulatory program for Drosophila linker histone H1 and chromatin remodeler CHD1. Kavi H, et al. G3 (Bethesda), 2015 Jan 27. PMID 25628309, Free PMC Article
    4. Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster. Dunn JG, et al. Elife, 2013 Dec 3. PMID 24302569, Free PMC Article
    5. Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach. Pazos Obregón F, et al. BMC Genomics, 2015 Sep 15. PMID 26370122, Free PMC Article

    See all (29) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables signaling receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein retention in ER lumen IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5742-PA
    CG5742-PB
    CG5742-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      18148096..18151410 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001274139.2 → NP_001261068.1  uncharacterized protein Dmel_CG5742, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261068.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7K3G2
      Conserved Domains (4) summary
      cd00204
      Location:86 → 175
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam11904
      Location:234 → 534
      GPCR_chapero_1; GPCR-chaperone
      pfam13857
      Location:104 → 156
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:86 → 116
      ANK; ANK repeat [structural motif]

    2. NM_137451.4 → NP_611295.1  uncharacterized protein Dmel_CG5742, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611295.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7K3G2
      Related
      FBpp0085959
      Conserved Domains (4) summary
      cd00204
      Location:86 → 175
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam11904
      Location:234 → 534
      GPCR_chapero_1; GPCR-chaperone
      pfam13857
      Location:104 → 156
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:86 → 116
      ANK; ANK repeat [structural motif]

    3. NM_001274140.2 → NP_001261069.1  uncharacterized protein Dmel_CG5742, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261069.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KFB5
      Conserved Domains (4) summary
      cd00204
      Location:86 → 175
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam11904
      Location:234 → 534
      GPCR_chapero_1; GPCR-chaperone
      pfam13857
      Location:104 → 156
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:86 → 116
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4KFB5 A0A0B4KFB5
    Q7K3G2 Q7K3G2

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