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    ydgD putative serine protease YdgD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946436, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydgD
    Official Full Name
    putative serine protease YdgD
    Primary source
    ECOCYC:G6856
    Locus tag
    b1598
    See related
    ASAP:ABE-0005340
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1593
    Summary
    Family S01. [More information is available at EcoGene: EG13925]. YdgD is a hypothetical protein. [More information is available at EcoCyc: G6856].
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    Genomic context

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    Sequence:
    NC_000913.3 (1671960..1672781)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene periplasmic chaperone Asr Neighboring gene uncharacterized protein YdgU Neighboring gene multidrug/spermidine efflux pump membrane subunit MdtI Neighboring gene multidrug/spermidine efflux pump membrane subunit MdtJ Neighboring gene protein MdtU

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of pathogen-specific and conserved genes expressed in vivo by an avian pathogenic Escherichia coli strain. Dozois CM, et al. Proc Natl Acad Sci U S A, 2003 Jan 7. PMID 12506201, Free PMC Article
    2. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    3. MEROPS: the peptidase database. Rawlings ND, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381862, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables serine-type peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative serine protease YdgD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1671960..1672781
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416115.1 putative serine protease YdgD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416115.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7A6Z3N9
      Conserved Domains (1) summary
      COG3591
      Location:2 → 272
      eMpr; V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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