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    yjhG D-xylonate dehydratase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946829, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yjhG
    Official Full Name
    D-xylonate dehydratase
    Primary source
    ECOCYC:G7910
    Locus tag
    b4297
    See related
    ASAP:ABE-0014087
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4286
    Summary
    AFMB Structural Genomics target Number 93 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG12549].
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    Genomic context

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    Sequence:
    NC_000913.3 (4522127..4524094, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator YjhU Neighboring gene putative transporter YjhF Neighboring gene putative 2-dehydro-3-deoxy-D-pentonate aldolase Neighboring gene putative DNA-binding transcriptional regulator YjhI

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High yield production of D-xylonic acid from D-xylose using engineered Escherichia coli. Liu H, et al. Bioresour Technol, 2012 Jul. PMID 21917451
    2. Characterization of D-xylonate dehydratase YjhG from Escherichia coli. Jiang Y, et al. Bioengineered, 2015. PMID 26083940, Free PMC Article
    3. Biosynthesis of ethylene glycol in Escherichia coli. Liu H, et al. Appl Microbiol Biotechnol, 2013 Apr. PMID 23233208
    4. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
    5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. D-xylonate dehydratase YjhG from Escherichia coli has been characterized.
      Title: Characterization of D-xylonate dehydratase YjhG from Escherichia coli.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables hydro-lyase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables hydro-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables xylonate dehydratase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables xylonate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables xylonate dehydratase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables xylonate dehydratase activity NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within aldonic acid catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in carboxylic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    D-xylonate dehydratase
    NP_418717.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4522127..4524094 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418717.1 D-xylonate dehydratase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418717.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5C9AK74
      Conserved Domains (1) summary
      PRK08211
      Location:1 → 655
      PRK08211; YjhG/YagF family D-xylonate dehydratase
    Nucleotide Protein
    Heading Accession and Version

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