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    Ribc1 RIB43A domain with coiled-coils 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 317431, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ribc1provided by RGD
    Official Full Name
    RIB43A domain with coiled-coils 1provided by RGD
    Primary source
    RGD:1359621
    See related
    EnsemblRapid:ENSRNOG00000003081 AllianceGenome:RGD:1359621
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in flagellated sperm motility. Predicted to be active in axonemal A tubule inner sheath and sperm flagellum. Orthologous to human RIBC1 (RIB43A domain with coiled-coils 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 77.2), Kidney (RPKM 41.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ribc1 in Genome Data Viewer
    Location:
    Xq13
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (24571126..24583170, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (21091717..21103688, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (21699361..21711335, complement)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 Neighboring gene microRNA 98 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 10 Neighboring gene structural maintenance of chromosomes 1A Neighboring gene large ribosomal subunit protein eL31-like Neighboring gene IQ motif and Sec7 domain ArfGEF 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC93902

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in flagellated sperm motility IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in flagellated sperm motility ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in flagellated sperm motility ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in axonemal A tubule inner sheath IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in axonemal A tubule inner sheath ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in axonemal A tubule inner sheath ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in sperm flagellum IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in sperm flagellum ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in sperm flagellum ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    RIB43A-like with coiled-coils protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007715.2 → NP_001007716.1  RIB43A-like with coiled-coils protein 1

      See identical proteins and their annotated locations for NP_001007716.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/Swiss-Prot
      Q6AYL4
      UniProtKB/TrEMBL
      A6KLB1
      Related
      ENSRNOP00000099215.1, ENSRNOT00000166338.1
      Conserved Domains (1) summary
      pfam05914
      Location:4 → 378
      RIB43A; RIB43A

    2. NM_001434170.1 → NP_001421099.1  RIB43A-like with coiled-coils protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/Swiss-Prot
      Q6AYL4
      UniProtKB/TrEMBL
      A6KLB1

    3. NM_001434172.1 → NP_001421101.1  RIB43A-like with coiled-coils protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/Swiss-Prot
      Q6AYL4
      UniProtKB/TrEMBL
      A6KLB1

    4. NM_001434174.1 → NP_001421103.1  RIB43A-like with coiled-coils protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/Swiss-Prot
      Q6AYL4
      UniProtKB/TrEMBL
      A6KLB1

    5. NM_001434176.1 → NP_001421105.1  RIB43A-like with coiled-coils protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/Swiss-Prot
      Q6AYL4
      UniProtKB/TrEMBL
      A6KLB1

    6. NM_001434178.1 → NP_001421107.1  RIB43A-like with coiled-coils protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/Swiss-Prot
      Q6AYL4
      UniProtKB/TrEMBL
      A6KLB1

    7. NM_001434180.1 → NP_001421109.1  RIB43A-like with coiled-coils protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/Swiss-Prot
      Q6AYL4
      UniProtKB/TrEMBL
      A6KLB1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      24571126..24583170 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006256803.5 → XP_006256865.1  RIB43A-like with coiled-coils protein 1 isoform X2

      Conserved Domains (1) summary
      pfam05914
      Location:4 → 378
      RIB43A; RIB43A

    2. XM_039099821.2 → XP_038955749.1  RIB43A-like with coiled-coils protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q0T1
      Conserved Domains (1) summary
      pfam05914
      Location:12 → 386
      RIB43A

    3. XM_006256802.5 → XP_006256864.1  RIB43A-like with coiled-coils protein 1 isoform X2

      Conserved Domains (1) summary
      pfam05914
      Location:4 → 378
      RIB43A; RIB43A

    4. XM_006256805.5 → XP_006256867.1  RIB43A-like with coiled-coils protein 1 isoform X2

      Conserved Domains (1) summary
      pfam05914
      Location:4 → 378
      RIB43A; RIB43A

    5. XM_006256800.4 → XP_006256862.1  RIB43A-like with coiled-coils protein 1 isoform X2

      Conserved Domains (1) summary
      pfam05914
      Location:4 → 378
      RIB43A; RIB43A

    6. XM_063280069.1 → XP_063136139.1  RIB43A-like with coiled-coils protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q0T1

    7. XM_039099816.2 → XP_038955744.1  RIB43A-like with coiled-coils protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q0T1
      Conserved Domains (1) summary
      pfam05914
      Location:12 → 386
      RIB43A

    8. XM_039099815.2 → XP_038955743.1  RIB43A-like with coiled-coils protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q0T1
      Related
      ENSRNOP00000004184.5, ENSRNOT00000004184.8
      Conserved Domains (1) summary
      pfam05914
      Location:12 → 386
      RIB43A

    9. XM_063280071.1 → XP_063136141.1  RIB43A-like with coiled-coils protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q0T1

    10. XM_063280068.1 → XP_063136138.1  RIB43A-like with coiled-coils protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q0T1

    11. XM_006256801.4 → XP_006256863.1  RIB43A-like with coiled-coils protein 1 isoform X2

      Conserved Domains (1) summary
      pfam05914
      Location:4 → 378
      RIB43A; RIB43A

    12. XM_039099817.2 → XP_038955745.1  RIB43A-like with coiled-coils protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q0T1
      Conserved Domains (1) summary
      pfam05914
      Location:12 → 386
      RIB43A

    13. XM_063280072.1 → XP_063136142.1  RIB43A-like with coiled-coils protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q0T1

    14. XM_039099822.2 → XP_038955750.1  RIB43A-like with coiled-coils protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q0T1
      Conserved Domains (1) summary
      pfam05914
      Location:12 → 386
      RIB43A

    15. XM_039099820.2 → XP_038955748.1  RIB43A-like with coiled-coils protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q0T1
      Conserved Domains (1) summary
      pfam05914
      Location:12 → 386
      RIB43A

    16. XM_039099818.2 → XP_038955746.1  RIB43A-like with coiled-coils protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q0T1
      Conserved Domains (1) summary
      pfam05914
      Location:12 → 386
      RIB43A

    17. XM_006256804.4 → XP_006256866.1  RIB43A-like with coiled-coils protein 1 isoform X2

      Conserved Domains (1) summary
      pfam05914
      Location:4 → 378
      RIB43A; RIB43A
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AYL4.1 GenPept UniProtKB/Swiss-Prot:Q6AYL4

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