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    CG1622 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 32282, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG1622provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0030468
    Locus tag
    Dmel_CG1622
    See related
    AllianceGenome:FB:FBgn0030468
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG1622
    Summary
    Predicted to be involved in mRNA splicing, via spliceosome. Part of precatalytic spliceosome. Is expressed in several structures, including antennal anlage; embryonic/larval midgut primordium; ganglia; head epidermis primordium; and mesoderm. Orthologous to human PRPF38B (pre-mRNA processing factor 38B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG1622 in Genome Data Viewer
    Location:
    11E9-11E9; 1-42 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (13297082..13299910)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (13191115..13193943)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Remoulade Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR45018 Neighboring gene Inositol 1,4,5-triphosphate kinase 2 Neighboring gene Peroxiredoxin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Conservation of the protein composition and electron microscopy structure of Drosophila melanogaster and human spliceosomal complexes. Herold N, et al. Mol Cell Biol, 2009 Jan. PMID 18981222, Free PMC Article
    2. The Central Region of the Drosophila Co-repressor Groucho as a Regulatory Hub. Kwong PN, et al. J Biol Chem, 2015 Dec 11. PMID 26483546, Free PMC Article
    3. spenito is required for sex determination in Drosophila melanogaster. Yan D, et al. Proc Natl Acad Sci U S A, 2015 Sep 15. PMID 26324914, Free PMC Article
    4. Comparative interactome analysis of α-arrestin families in human and Drosophila. Lee KT, et al. Elife, 2024 Jan 25. PMID 38270169, Free PMC Article
    5. Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes. Phanse S, et al. Data Brief, 2016 Mar. PMID 26870755, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of precatalytic spliceosome HDA PubMed 
    part_of precatalytic spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG1622-PA
    CG1622-PB
    CG1622-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      13297082..13299910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001298270.1 → NP_001285199.1  uncharacterized protein Dmel_CG1622, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285199.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      X2JF51
      Conserved Domains (1) summary
      pfam03371
      Location:24 → 138
      PRP38; PRP38 family

    2. NM_001272583.2 → NP_001259512.1  uncharacterized protein Dmel_CG1622, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001259512.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PHQ4
      Conserved Domains (1) summary
      pfam03371
      Location:24 → 172
      PRP38; PRP38 family

    3. NM_132644.3 → NP_572872.1  uncharacterized protein Dmel_CG1622, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_572872.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VYE9
      Related
      FBpp0073588
      Conserved Domains (1) summary
      pfam03371
      Location:24 → 205
      PRP38; PRP38 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PHQ4 M9PHQ4
    Q8MR43 Q8MR43
    Q9VYE9 Q9VYE9
    X2JF51 X2JF51

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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