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    CG5815 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43266, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG5815provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0027574
    Locus tag
    Dmel_CG5815
    See related
    AllianceGenome:FB:FBgn0027574
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:GH07089; BcDNA:GH07346; Dmel\CG5815; Spt2
    Summary
    Predicted to enable DNA binding activity and histone binding activity. Predicted to be involved in nucleosome assembly and transcription by RNA polymerase I. Predicted to be active in nucleolus. Is expressed in organism. Orthologous to human SPTY2D1 (SPT2 chromatin protein domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG5815 in Genome Data Viewer
    Location:
    97E2-97E2; 3-92 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (27112566..27115126)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (22938288..22940848)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Carbonic anhydrase 9 Neighboring gene antisense RNA:CR45209 Neighboring gene genderblind Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A glial amino-acid transporter controls synapse strength and courtship in Drosophila. Grosjean Y, et al. Nat Neurosci, 2008 Jan. PMID 18066061, Free PMC Article
    2. New Drosophila Long-Term Memory Genes Revealed by Assessing Computational Function Prediction Methods. Kacsoh BZ, et al. G3 (Bethesda), 2019 Jan 9. PMID 30463884, Free PMC Article
    3. Exploring developmental and physiological functions of fatty acid and lipid variants through worm and fly genetics. Zhu H, et al. Annu Rev Genet, 2014. PMID 25195508
    4. Spt6 enhances the elongation rate of RNA polymerase II in vivo. Ardehali MB, et al. EMBO J, 2009 Apr 22. PMID 19279664, Free PMC Article
    5. Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library. Lowe N, et al. Development, 2014 Oct. PMID 25294943, Free PMC Article

    See all (28) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transcription by RNA polymerase I IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5815-PA
    CG5815-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      27112566..27115126
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_170317.2 → NP_733196.1  uncharacterized protein Dmel_CG5815, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_733196.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8IMP6, Q8SYF3, Q9Y132
      UniProtKB/TrEMBL
      B5RIH0
      Related
      FBpp0084476
      Conserved Domains (1) summary
      pfam08243
      Location:500 → 573
      SPT2; SPT2 chromatin protein

    2. NM_143280.3 → NP_651537.3  uncharacterized protein Dmel_CG5815, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651537.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      B5RIH0
      Conserved Domains (1) summary
      pfam08243
      Location:498 → 571
      SPT2; SPT2 chromatin protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8IMP6.1 Q8IMP6

    Gene LinkOut

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