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    Mrps28 mitochondrial ribosomal protein S28 [ Mus musculus (house mouse) ]

    Gene ID: 66230, updated on 27-Nov-2024

    Summary

    Official Symbol
    Mrps28provided by MGI
    Official Full Name
    mitochondrial ribosomal protein S28provided by MGI
    Primary source
    MGI:MGI:1913480
    See related
    Ensembl:ENSMUSG00000040269 AllianceGenome:MGI:1913480
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1500012D08Rik
    Summary
    Predicted to be involved in mitochondrial translation. Located in mitochondrion. Is expressed in several structures, including brain; early conceptus; genitourinary system; heart; and liver. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 47. Orthologous to human MRPS28 (mitochondrial ribosomal protein S28). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 47.0), liver E14.5 (RPKM 25.2) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Mrps28 in Genome Data Viewer
    Location:
    3 A1; 3 2.17 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (8867206..8988917, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (8802146..8923857, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52598 Neighboring gene predicted gene, 52599 Neighboring gene prothymosin alpha pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr3:8916344-8916645 Neighboring gene predicted gene, 52600 Neighboring gene STARR-seq mESC enhancer starr_06865 Neighboring gene predicted gene, 52601 Neighboring gene tumor protein D52 Neighboring gene STARR-seq mESC enhancer starr_06870 Neighboring gene STARR-seq mESC enhancer starr_06875 Neighboring gene STARR-positive B cell enhancer ABC_E7899 Neighboring gene STARR-seq mESC enhancer starr_06879 Neighboring gene STARR-seq mESC enhancer starr_06880 Neighboring gene STARR-seq mESC enhancer starr_06881 Neighboring gene predicted gene, 46832

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    small ribosomal subunit protein bS1m
    Names
    28S ribosomal protein S28, mitochondrial
    MRP-S28
    S28mt

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025434.3NP_079710.3  small ribosomal subunit protein bS1m

      See identical proteins and their annotated locations for NP_079710.3

      Status: VALIDATED

      Source sequence(s)
      AK005229, AK011036, BE944486
      Consensus CDS
      CCDS17233.1
      UniProtKB/Swiss-Prot
      Q8R2K6, Q9CY16
      Related
      ENSMUSP00000038305.6, ENSMUST00000042148.6
      Conserved Domains (1) summary
      pfam10246
      Location:73177
      MRP-S35; Mitochondrial ribosomal protein MRP-S35

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      8867206..8988917 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)