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    Plac8l1 PLAC8-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 69401, updated on 9-Dec-2024

    Summary

    Official Symbol
    Plac8l1provided by MGI
    Official Full Name
    PLAC8-like 1provided by MGI
    Primary source
    MGI:MGI:1916651
    See related
    Ensembl:ENSMUSG00000059455 AllianceGenome:MGI:1916651
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700009N18Rik; 1700015M15Rik
    Summary
    Orthologous to human PLAC8L1 (PLAC8 like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 45.6) See more
    Orthologs
    NEW
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    Genomic context

    See Plac8l1 in Genome Data Viewer
    Location:
    18 B3; 18 22.35 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (42311740..42329774, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (42178675..42196709, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene SH3 domain containing ring finger 2 Neighboring gene STARR-seq mESC enhancer starr_44432 Neighboring gene cystatin domain containing 7 Neighboring gene predicted gene, 18086 Neighboring gene high mobility group box 1-like pseudogene Neighboring gene leucyl-tRNA synthetase 1 Neighboring gene STARR-seq mESC enhancer starr_44434 Neighboring gene ribosomal protein S19, pseudogene 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027072.1NP_081348.1  PLAC8-like protein 1

      See identical proteins and their annotated locations for NP_081348.1

      Status: VALIDATED

      Source sequence(s)
      AK005800, AK006002, AV254807, AV265480
      Consensus CDS
      CCDS50266.1
      UniProtKB/Swiss-Prot
      Q08EJ0, Q9DAB1
      Related
      ENSMUSP00000080111.3, ENSMUST00000081374.4
      Conserved Domains (1) summary
      TIGR01571
      Location:70158
      A_thal_Cys_rich; uncharacterized Cys-rich domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      42311740..42329774 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)