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    LINC02210 long intergenic non-protein coding RNA 2210 [ Homo sapiens (human) ]

    Gene ID: 147081, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02210provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2210provided by HGNC
    Primary source
    HGNC:HGNC:26327
    See related
    Ensembl:ENSG00000293460 AllianceGenome:HGNC:26327
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C17orf69; CRHR1-IT1
    Expression
    Ubiquitous expression in skin (RPKM 2.2), brain (RPKM 2.1) and 23 other tissues See more
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    Genomic context

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    See LINC02210 in Genome Data Viewer
    Location:
    17q21.31
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (45620329..45646231)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (46482013..46507919)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (43697695..43723597)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:43677957-43678654 Neighboring gene mitogen-activated protein kinase 8 interacting protein 1 pseudogene 2 Neighboring gene LINC02210-CRHR1 readthrough Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:43695849-43696828 Neighboring gene ribosomal protein S26 pseudogene 8 Neighboring gene ARF GTPase 2, pseudogene Neighboring gene uncharacterized LOC105371802 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:43782244-43783443 Neighboring gene Sharpr-MPRA regulatory region 9533 Neighboring gene uncharacterized LOC107985028

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies. International Parkinson Disease Genomics Consortium, et al. Lancet, 2011 Feb 19. PMID 21292315, Free PMC Article
    2. Genome-wide association study reveals genetic risk underlying Parkinson's disease. Simón-Sánchez J, et al. Nat Genet, 2009 Dec. PMID 19915575, Free PMC Article
    3. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. Kim YC, et al. Proc Natl Acad Sci U S A, 2009 May 19. PMID 19416867, Free PMC Article
    4. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study reveals genetic risk underlying Parkinson's disease.
    EBI GWAS Catalog
    Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Readthrough LINC02210-CRHR1

    Readthrough gene: LINC02210-CRHR1, Included gene: CRHR1

    Other Names

    • CRHR1 intronic transcript 1 (non-protein coding)
    • LINC.tmp695175

    Clone Names

    • FLJ18493, FLJ25168, FLJ30754, FLJ34210, FLJ36594, FLJ60266, FLJ60308, MGC57346

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026680.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC126544, AK311451, BC012843, GD136344

    2. NR_027295.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC012843, BC045575, GD136344
      Related
      ENST00000455565.5

    3. NR_138257.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC126544

    4. NR_138258.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC126544

    5. NR_138259.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC126544

    6. NR_138260.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC126544

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      45620329..45646231
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_167251.2 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      1141731..1168475 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NT_187663.1 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      322453..348359
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      46482013..46507919
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_152466.1: Suppressed sequence

      Description
      NM_152466.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.

    2. NR_026906.2: Suppressed sequence

      Description
      NR_026906.2: This RefSeq was removed because it represented a partial transcript.
    Nucleotide Protein
    Heading Accession and Version

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