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    LINC01736 long intergenic non-protein coding RNA 1736 [ Homo sapiens (human) ]

    Gene ID: 101927532, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01736provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1736provided by HGNC
    Primary source
    HGNC:HGNC:52524
    See related
    Ensembl:ENSG00000228058 AllianceGenome:HGNC:52524
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in brain (RPKM 1.2), adrenal (RPKM 0.7) and 5 other tissues See more
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    Genomic context

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    See LINC01736 in Genome Data Viewer
    Location:
    1q42.13
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (230002717..230007162)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (229382243..229386688)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (230138464..230142909)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1682 Neighboring gene uncharacterized LOC105373163 Neighboring gene MPRA-validated peak757 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:230153835-230154406 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:230155973-230156473 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:230182250-230182750 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:230194023-230194523 Neighboring gene U7 small nuclear RNA Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2708 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1936 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1937 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2709 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:230207245-230207425 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:230220010-230220551 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 2 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:230240174-230241373 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2711 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2713 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:230247432-230248098 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:230248997-230250196 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2715 Neighboring gene Sharpr-MPRA regulatory region 12256 Neighboring gene Sharpr-MPRA regulatory region 1224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:230272664-230273164 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:230273165-230273665 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:230276043-230276635 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2716 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:230311720-230311947 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:230321452-230322190 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:230322191-230322929 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:230334008-230334701 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:230336117-230336616 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:230361793-230362294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:230362295-230362794 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:230387089-230387750 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:230387751-230388411 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:230390520-230391020 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:230391021-230391521 Neighboring gene uncharacterized LOC124904542 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:230400862-230401362 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:230401363-230401863 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:230402952-230403462 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:230403463-230403971 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:230403972-230404481 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:230404482-230404990

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. RP11-552D4.1: a novel m6a-related LncRNA associated with immune status in glioblastoma. Zheng P, et al. Aging (Albany NY), 2022 Jul 18. PMID 35852867, Free PMC Article
    2. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RP11-552D4.1: a novel m6a-related LncRNA associated with immune status in glioblastoma.
      Title: RP11-552D4.1: a novel m6a-related LncRNA associated with immune status in glioblastoma.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • RP11-552D4.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135116.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BG181918, DA255160
      Related
      ENST00000445339.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      230002717..230007162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      229382243..229386688
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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