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    LOC100505918 uncharacterized LOC100505918 [ Homo sapiens (human) ]

    Gene ID: 100505918, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC100505918
    Gene description
    uncharacterized LOC100505918
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC100505918 in Genome Data Viewer
    Location:
    1q24.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (168400191..168422656, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (167752512..167776173, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (168369429..168391894, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene dynactin subunit 5 pseudogene Neighboring gene microRNA 557 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:168356076-168356657 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:168356658-168357238 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:168357239-168357820 Neighboring gene uncharacterized LOC125312414 Neighboring gene OCT4 hESC enhancer GRCh37_chr1:168397241-168397782 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1544 Neighboring gene QRSL1 pseudogene 1 Neighboring gene uncharacterized LOC101928565 Neighboring gene MPRA-validated peak443 silencer Neighboring gene MPRA-validated peak444 silencer

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037851.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022100, AL023755

    2. NR_176058.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022100, AL023755

    3. NR_176059.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022100, AL023755

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      168400191..168422656 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      167752512..167776173 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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