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    Gprin3 GPRIN family member 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 502784, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Gprin3provided by RGD
    Official Full Name
    GPRIN family member 3provided by RGD
    Primary source
    RGD:1565690
    See related
    EnsemblRapid:ENSRNOG00000023657 AllianceGenome:RGD:1565690
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565690
    Summary
    Predicted to be involved in neuron projection development. Predicted to be active in plasma membrane. Orthologous to human GPRIN3 (GPRIN family member 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Liver (RPKM 102.6), Heart (RPKM 81.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Gprin3 in Genome Data Viewer
    Location:
    4q24
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (89902198..89987496, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (88572062..88657369, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (89690678..89778302, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA binding domain containing 5, pseudogene 1 Neighboring gene tigger transposable element derived 2 Neighboring gene sentrin-specific protease 6-like Neighboring gene SUMO specific peptidase 6, pseudogene 1 Neighboring gene uncharacterized LOC134486587 Neighboring gene uncharacterized LOC108350862 Neighboring gene uncharacterized LOC120102288

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in neuron projection development IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    G protein-regulated inducer of neurite outgrowth 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398918.1 → NP_001385847.1  G protein-regulated inducer of neurite outgrowth 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A8I6A8S7, A6K147, D3ZF21
      Related
      ENSRNOP00000087851.1, ENSRNOT00000104119.2
      Conserved Domains (1) summary
      pfam15235
      Location:636 → 757
      GRIN_C; G protein-regulated inducer of neurite outgrowth C-terminus

    2. NM_001398919.1 → NP_001385848.1  G protein-regulated inducer of neurite outgrowth 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A8I6A8S7, A6K147, D3ZF21
      Related
      ENSRNOP00000055378.5, ENSRNOT00000039316.7
      Conserved Domains (1) summary
      pfam15235
      Location:636 → 757
      GRIN_C; G protein-regulated inducer of neurite outgrowth C-terminus

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      89902198..89987496 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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