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    Prknl1 parkin RBR E3 ubiquitin protein ligase like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 502612, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Prknl1provided by RGD
    Official Full Name
    parkin RBR E3 ubiquitin protein ligase like 1provided by RGD
    Primary source
    RGD:1564133
    See related
    AllianceGenome:RGD:1564133
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564133
    Summary
    Predicted to enable small molecule binding activity. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 8.1) and Uterus (RPKM 2.4) See more
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    Genomic context

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    See Prknl1 in Genome Data Viewer
    Location:
    3p13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (28965802..28972738)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (8571021..8574555)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (2990757..2994002, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene progestagen associated endometrial protein like 1 Neighboring gene lipocalin 3 Neighboring gene von Ebner gland protein 1-like Neighboring gene odorant binding protein 2B like 1 Neighboring gene odorant binding protein 2B Neighboring gene eukaryotic translation initiation factor 4E, pseudogene 4 Neighboring gene lipocalin-15 like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables small molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    lipocalin-1-like; odorant-binding protein 2a-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      28965802..28972738
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063284813.1 → XP_063140883.1  odorant-binding protein 2a-like isoform X2

      UniProtKB/TrEMBL
      A0A0G2K8F0

    2. XM_063284812.1 → XP_063140882.1  lipocalin-1-like isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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