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    Fam90a1a family with sequence similarity 90, member A1A [ Mus musculus (house mouse) ]

    Gene ID: 97476, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Fam90a1aprovided by MGI
    Official Full Name
    family with sequence similarity 90, member A1Aprovided by MGI
    Primary source
    MGI:MGI:2142877
    See related
    Ensembl:ENSMUSG00000079112 AllianceGenome:MGI:2142877
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to several human genes including FAM90A13 (family with sequence similarity 90 member A13); FAM90A14 (family with sequence similarity 90 member A14); and FAM90A15 (family with sequence similarity 90 member A15). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Fam90a1a in Genome Data Viewer
    Location:
    8 A2; 8 10.7 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (22448730..22454319)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (21958714..21964303)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene defensin beta 35 Neighboring gene STARR-seq mESC enhancer starr_20895 Neighboring gene predicted gene, 29821 Neighboring gene defensin beta 13 Neighboring gene coiled-coil domain containing 70 Neighboring gene STARR-seq mESC enhancer starr_20896 Neighboring gene ATPase, copper transporting, beta polypeptide

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo. Evsikov AV, et al. Genes Dev, 2006 Oct 1. PMID 17015433, Free PMC Article
    2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM90A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081662.1 → NP_001075131.1  protein FAM90A1

      Status: VALIDATED

      Source sequence(s)
      AK135805, DV648735
      Consensus CDS
      CCDS52517.1
      UniProtKB/TrEMBL
      A2A4E2
      Related
      ENSMUSP00000106369.2, ENSMUST00000110741.2
      Conserved Domains (1) summary
      pfam15288
      Location:37 → 76
      zf-CCHC_6; Zinc knuckle

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      22448730..22454319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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