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    4930544D05Rik RIKEN cDNA 4930544D05 gene [ Mus musculus (house mouse) ]

    Gene ID: 668433, updated on 9-Dec-2024

    Summary

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    Official Symbol
    4930544D05Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930544D05 geneprovided by MGI
    Primary source
    MGI:MGI:2148639
    See related
    Ensembl:ENSMUSG00000087279 AllianceGenome:MGI:2148639
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C17orf107 (chromosome 17 open reading frame 107). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 201.1) See more
    Orthologs
    human all
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    Genomic context

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    See 4930544D05Rik in Genome Data Viewer
    Location:
    11 B3; 11 43.14 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (70506600..70507718)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (70615589..70616892)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene phospholipase D2 Neighboring gene misshapen-like kinase 1 (zebrafish) Neighboring gene STARR-seq mESC enhancer starr_29877 Neighboring gene predicted gene, 51905 Neighboring gene cholinergic receptor, nicotinic, epsilon polypeptide Neighboring gene predicted gene 12315 Neighboring gene glycoprotein 1b, alpha polypeptide

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C17orf107 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145537.1 → NP_001139009.1  uncharacterized protein C17orf107 homolog

      Status: VALIDATED

      Source sequence(s)
      AL592547
      Consensus CDS
      CCDS56785.1
      UniProtKB/TrEMBL
      J3QJW4
      Related
      ENSMUSP00000136077.2, ENSMUST00000144960.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      70506600..70507718
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006533966.5 → XP_006534029.1  uncharacterized protein C17orf107 homolog isoform X1

      See identical proteins and their annotated locations for XP_006534029.1

      UniProtKB/TrEMBL
      J3QK56
      Related
      ENSMUSP00000137259.2, ENSMUST00000180052.8
      Conserved Domains (1) summary
      pfam17688
      Location:1 → 186
      DUF5536; Family of unknown function (DUF5536)
    Nucleotide Protein Strain
    Heading Accession and Version

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