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    N4bp2l1 NEDD4 binding protein 2-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498131, updated on 27-Nov-2024

    Summary

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    Official Symbol
    N4bp2l1provided by RGD
    Official Full Name
    NEDD4 binding protein 2-like 1provided by RGD
    Primary source
    RGD:1595713
    See related
    AllianceGenome:RGD:1595713
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human N4BP2L1 (NEDD4 binding protein 2 like 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Adrenal (RPKM 70.5), Spleen (RPKM 66.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See N4bp2l1 in Genome Data Viewer
    Location:
    12p12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (4938199..4965003, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (102572..128352, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (546759..576744, complement)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene zygote arrest 1-like Neighboring gene U4 spliceosomal RNA Neighboring gene BRCA2, DNA repair associated Neighboring gene NEDD4 binding protein 2-like 2 Neighboring gene PDS5 cohesin associated factor B Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    NEDD4-binding protein 2-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001035222.2 → NP_001030299.1  NEDD4-binding protein 2-like 1

      See identical proteins and their annotated locations for NP_001030299.1

      Status: PROVISIONAL

      Source sequence(s)
      BC168658
      UniProtKB/TrEMBL
      B5DEG3
      Conserved Domains (1) summary
      pfam13671
      Location:42 → 175
      AAA_33; AAA domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      4938199..4965003 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039089675.2 → XP_038945603.1  NEDD4-binding protein 2-like 1 isoform X1

      Conserved Domains (1) summary
      pfam13671
      Location:42 → 128
      AAA_33; AAA domain

    RNA

    1. XR_005491660.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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