U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    2810429I04Rik RIKEN cDNA 2810429I04 gene [ Mus musculus (house mouse) ]

    Gene ID: 76937, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    2810429I04Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2810429I04 geneprovided by MGI
    Primary source
    MGI:MGI:1924187
    See related
    Ensembl:ENSMUSG00000097709 AllianceGenome:MGI:1924187
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700024F13Rik
    Summary
    Enables miRNA binding activity. Acts upstream of or within cardiac muscle cell proliferation. Is expressed in several structures, including liver; lung; muscle tissue; spleen; and stomach. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in CNS E11.5 (RPKM 2.1), CNS E14 (RPKM 1.9) and 11 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See 2810429I04Rik in Genome Data Viewer
    Location:
    13 A1; 13 1.94 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (3528232..3551393)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (3478232..3501393)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene 16505 Neighboring gene STARR-seq mESC enhancer starr_33477 Neighboring gene STARR-positive B cell enhancer ABC_E5366 Neighboring gene STARR-seq mESC enhancer starr_33478 Neighboring gene STARR-seq mESC enhancer starr_33479 Neighboring gene STARR-seq mESC enhancer starr_33480 Neighboring gene STARR-seq mESC enhancer starr_33481 Neighboring gene STARR-seq mESC enhancer starr_33482 Neighboring gene COX11 homolog, cytochrome c oxidase assembly protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_33483 Neighboring gene STARR-seq mESC enhancer starr_33484 Neighboring gene STARR-positive B cell enhancer ABC_E3071 Neighboring gene predicted gene, 40654 Neighboring gene STARR-positive B cell enhancer ABC_E1159 Neighboring gene GDP dissociation inhibitor 2 Neighboring gene transcription activation suppressor family member 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The long noncoding RNA NR_045363 involves cardiomyocyte apoptosis and cardiac repair via p53 signal pathway. Chen X, et al. Cell Biol Int, 2020 Sep. PMID 32374467
    2. A long noncoding RNA NR_045363 controls cardiomyocyte proliferation and cardiac repair. Wang J, et al. J Mol Cell Cardiol, 2019 Feb. PMID 30553885
    3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The long noncoding RNA NR_045363 involves cardiomyocyte apoptosis and cardiac repair via p53 signal pathway.
      Title: The long noncoding RNA NR_045363 involves cardiomyocyte apoptosis and cardiac repair via p53 signal pathway.
    2. NR_045363 is a potent Long noncoding RNA modulator essential for cardiomyocyte proliferation.
      Title: A long noncoding RNA NR_045363 controls cardiomyocyte proliferation and cardiac repair.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables miRNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cardiac muscle cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015522.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC134826

    2. NR_045363.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC134826
      Related
      ENSMUST00000243244.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      3528232..3551393
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.