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    1700001J03Rik RIKEN cDNA 1700001J03 gene [ Mus musculus (house mouse) ]

    Gene ID: 69282, updated on 27-Nov-2024

    Summary

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    Official Symbol
    1700001J03Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700001J03 geneprovided by MGI
    Primary source
    MGI:MGI:1916532
    See related
    Ensembl:ENSMUSG00000095040 AllianceGenome:MGI:1916532
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward testis adult (RPKM 163.0) See more
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    Genomic context

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    See 1700001J03Rik in Genome Data Viewer
    Location:
    5 G3; 5 85.17 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (146119251..146125563, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (146182441..146190196, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene 5565 Neighboring gene predicted gene 6309 Neighboring gene cytochrome P450, family 3, subfamily a, member 60, pseudogene Neighboring gene ring finger protein (C3H2C3 type) 6 Neighboring gene STARR-positive B cell enhancer ABC_E4806

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC69282

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008547.2 → NP_001008547.1  uncharacterized protein LOC69282

      See identical proteins and their annotated locations for NP_001008547.1

      Status: VALIDATED

      Source sequence(s)
      AC113316
      Consensus CDS
      CCDS51699.1
      UniProtKB/TrEMBL
      Q80ZR8
      Related
      ENSMUSP00000073399.6, ENSMUST00000073721.7
      Conserved Domains (1) summary
      cd06224
      Location:89 → 183
      REM; Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately ...

    2. NM_001418329.1 → NP_001405258.1  uncharacterized protein LOC69282

      Status: VALIDATED

      Source sequence(s)
      AC113316
      UniProtKB/TrEMBL
      Q80ZR8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      146119251..146125563 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030254790.2 → XP_030110650.1  uncharacterized protein LOC69282 isoform X1

      Conserved Domains (1) summary
      cd06224
      Location:89 → 183
      REM; Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately ...
    Nucleotide Protein Strain
    Heading Accession and Version

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