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    LOC102639987 uncharacterized LOC102639987 [ Mus musculus (house mouse) ]

    Gene ID: 102639987, updated on 8-Feb-2024

    Summary

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    Gene symbol
    LOC102639987
    Gene description
    uncharacterized LOC102639987
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in limb E14.5 (RPKM 1.1), CNS E18 (RPKM 0.7) and 10 other tissues See more
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    Genomic context

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    See LOC102639987 in Genome Data Viewer
    Location:
    2 A1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (4290054..4297186, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene FERM domain containing 4A Neighboring gene UPF0688 protein C1orf174 homolog pseudogene Neighboring gene VISTA enhancer mm1695 Neighboring gene predicted gene, 39752 Neighboring gene VISTA enhancer mm418 Neighboring gene VISTA enhancer mm28 Neighboring gene VISTA enhancer mm419 Neighboring gene VISTA enhancer mm420 Neighboring gene predicted gene, 23691 Neighboring gene predicted gene, 39751

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000068.8 Chromosome 2 Reference GRCm39 C57BL/6J

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      4290054..4297186 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004940824.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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