U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Il17rc interleukin 17 receptor C [ Mus musculus (house mouse) ]

    Gene ID: 171095, updated on 27-Nov-2024

    Summary

    Official Symbol
    Il17rcprovided by MGI
    Official Full Name
    interleukin 17 receptor Cprovided by MGI
    Primary source
    MGI:MGI:2159336
    See related
    Ensembl:ENSMUSG00000030281 AllianceGenome:MGI:2159336
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Il17rl; Gm19850; IL-17RC; IL17-RC; IL17-RL; 1110025H02Rik
    Summary
    Enables signaling receptor binding activity. Involved in defense response to fungus; granulocyte chemotaxis; and positive regulation of interleukin-6 production. Acts upstream of or within positive regulation of cytokine production involved in inflammatory response. Located in cell surface and plasma membrane. Is expressed in hip; sensory organ; and skeleton. Human ortholog(s) of this gene implicated in chronic mucocutaneous candidiasis. Orthologous to human IL17RC (interleukin 17 receptor C). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in small intestine adult (RPKM 138.6), duodenum adult (RPKM 133.9) and 12 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Il17rc in Genome Data Viewer
    Location:
    6 E3; 6 52.77 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (113448416..113460124)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (113471455..113483163)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8122 Neighboring gene jagunal homolog 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:113408068-113408221 Neighboring gene interleukin 17 receptor E Neighboring gene predicted gene, 52872 Neighboring gene STARR-positive B cell enhancer ABC_E684 Neighboring gene STARR-seq mESC enhancer starr_17041 Neighboring gene cysteine-rich with EGF-like domains 1 Neighboring gene proline-rich transmembrane protein 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (4) 
    • Gene trapped (1) 
    • Targeted (4)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables coreceptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables coreceptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables interleukin-17 receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables interleukin-17 receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables signaling receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    interleukin-17 receptor C
    Names
    IL-17 receptor C
    IL-17RL
    interleukin-17 receptor-like protein
    zcytoR14

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_134159.4NP_598920.3  interleukin-17 receptor C isoform 2

      See identical proteins and their annotated locations for NP_598920.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon and uses a different splice site in the coding region, compared to variant 1. The resulting protein (isoform 2) is shorter when it is compared to isoform 1.
      Source sequence(s)
      AF458066, AI592368, AK075634, AW045329, BY018830
      Consensus CDS
      CCDS20422.1
      UniProtKB/TrEMBL
      F7AR97
      Related
      ENSMUSP00000055343.8, ENSMUST00000058300.14
      Conserved Domains (2) summary
      pfam08357
      Location:473623
      SEFIR; SEFIR domain
      pfam15037
      Location:71432
      IL17_R_N; Interleukin-17 receptor extracellular region
    2. NM_178942.1NP_849273.1  interleukin-17 receptor C isoform 1 precursor

      See identical proteins and their annotated locations for NP_849273.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer variant and it encodes the longer protein (isoform 1).
      Source sequence(s)
      AF458066, AI592368, AK040950, AK075634, BY018830
      UniProtKB/Swiss-Prot
      G3X9C0, Q8K4C2, Q99J43
      UniProtKB/TrEMBL
      F7AR97
      Related
      ENSMUSP00000145038.2, ENSMUST00000205208.3
      Conserved Domains (2) summary
      pfam08357
      Location:497647
      SEFIR; SEFIR domain
      pfam15037
      Location:71456
      IL17_R_N; Interleukin-17 receptor extracellular region

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      113448416..113460124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006505665.1XP_006505728.1  interleukin-17 receptor C isoform X1

      See identical proteins and their annotated locations for XP_006505728.1

      UniProtKB/TrEMBL
      F7AR97
      Conserved Domains (2) summary
      pfam08357
      Location:488638
      SEFIR; SEFIR domain
      pfam15037
      Location:71447
      IL17_R_N; Interleukin-17 receptor extracellular region
    2. XM_006505666.1XP_006505729.1  interleukin-17 receptor C isoform X2

      See identical proteins and their annotated locations for XP_006505729.1

      UniProtKB/TrEMBL
      F7AR97
      Conserved Domains (2) summary
      pfam08357
      Location:482632
      SEFIR; SEFIR domain
      pfam15037
      Location:71441
      IL17_R_N; Interleukin-17 receptor extracellular region
    3. XM_006505668.3XP_006505731.1  interleukin-17 receptor C isoform X4

      Conserved Domains (1) summary
      pfam15037
      Location:71371
      IL17_R_N; Interleukin-17 receptor extracellular region
    4. XM_006505667.4XP_006505730.1  interleukin-17 receptor C isoform X3

      Conserved Domains (1) summary
      pfam15037
      Location:71366
      IL17_R_N; Interleukin-17 receptor extracellular region

    RNA

    1. XR_001785101.1 RNA Sequence