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    uncharacterized protein [ Saccharomyces cerevisiae S288C ]

    Gene ID: 856451, updated on 9-Dec-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    SGD:S000001096
    Locus tag
    YHR054C
    See related
    AllianceGenome:SGD:S000001096; FungiDB:YHR054C; VEuPathDB:YHR054C
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    Location:
    chromosome: VIII
    Exon count:
    1
    Sequence:
    Chromosome: VIII; NC_001140.6 (213185..214249, complement)

    Chromosome VIII - NC_001140.6Genomic Context describing neighboring genes Neighboring gene Cic1p Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene metallothionein CUP1-1 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene metallothionein CUP1-2 Neighboring gene Rsc30p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001140.6

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Massive Amplification at an Unselected Locus Accompanies Complex Chromosomal Rearrangements in Yeast. Thierry A, et al. G3 (Bethesda), 2016 May 3. PMID 26945028, Free PMC Article
    2. Structures of naturally evolved CUP1 tandem arrays in yeast indicate that these arrays are generated by unequal nonhomologous recombination. Zhao Y, et al. G3 (Bethesda), 2014 Sep 17. PMID 25236733, Free PMC Article
    3. Variation in gene duplicates with low synonymous divergence in Saccharomyces cerevisiae relative to Caenorhabditis elegans. Katju V, et al. Genome Biol, 2009. PMID 19594930, Free PMC Article
    4. Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII. Johnston M, et al. Science, 1994 Sep 30. PMID 8091229
    5. A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export. Oliete-Calvo P, et al. EMBO Rep, 2018 Nov. PMID 30249596, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_011921.1
    • hypothetical protein; partial duplicate of RSC30/YHR056C, truncated remnant of segmental duplication

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001140.6 Reference assembly

      Range
      213185..214249 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001179184.1 → NP_011921.1  TPA: uncharacterized protein YHR054C [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_011921.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D3DL03, P38780
      UniProtKB/TrEMBL
      B5VJY3, I9AHI2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P38780.1

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases
    Research Materials