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    F40F8.5 Expressed conserved protein;Filaggrin-like;Secreted protein [ Caenorhabditis elegans ]

    Gene ID: 174702, updated on 18-Sep-2024

    Summary

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    Official Symbol
    F40F8.5
    Official Full Name
    Expressed conserved protein;Filaggrin-like;Secreted protein
    Primary source
    WormBase:WBGene00009578
    Locus tag
    CELE_F40F8.5
    See related
    AllianceGenome:WB:WBGene00009578
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See F40F8.5 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    9
    Sequence:
    Chromosome: II; NC_003280.10 (11132852..11134928, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Transmembrane protein 42 Neighboring gene Uncharacterized protein Neighboring gene NADAR domain-containing protein Neighboring gene Fatty-acid and retinol-binding protein 1 Neighboring gene Arrestin C-terminal-like domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MEX-3 interacting proteins link cell polarity to asymmetric gene expression in Caenorhabditis elegans. Huang NN, et al. Development, 2002 Feb. PMID 11830574
    2. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    4. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    Expressed conserved protein;Filaggrin-like;Secreted protein
    NP_001254280.1
    • Confirmed by transcript evidence
    NP_001254281.1
    • Confirmed by transcript evidence
    NP_001254282.1
    • Confirmed by transcript evidence
    NP_001254283.1
    • Confirmed by transcript evidence
    NP_001254284.1
    • Confirmed by transcript evidence
    NP_001254285.1
    • Confirmed by transcript evidence
    NP_001254286.1
    • Confirmed by transcript evidence
    NP_001254287.1
    • Confirmed by transcript evidence
    NP_001254288.1
    • Confirmed by transcript evidence
    NP_001254289.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      11132852..11134928 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001267360.3 → NP_001254289.1  Filaggrin-like [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254289.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L2A2
      Conserved Domains (1) summary
      PRK12678
      Location:148 → 272
      PRK12678; transcription termination factor Rho; Provisional

    2. NM_001267351.5 → NP_001254280.1  Secreted protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254280.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L296

    3. NM_001267352.5 → NP_001254281.1  Expressed conserved protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254281.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L298

    4. NM_001267353.5 → NP_001254282.1  Expressed conserved protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254282.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L299

    5. NM_001267354.5 → NP_001254283.1  Expressed conserved protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254283.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L2A5

    6. NM_001267355.3 → NP_001254284.1  Expressed conserved protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254284.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L2A6

    7. NM_001267356.5 → NP_001254285.1  Expressed conserved protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254285.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L2A0

    8. NM_001267357.3 → NP_001254286.1  Expressed conserved protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254286.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L2A4
      Conserved Domains (1) summary
      PRK12678
      Location:148 → 272
      PRK12678; transcription termination factor Rho; Provisional

    9. NM_001267358.5 → NP_001254287.1  Expressed conserved protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254287.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L2A1
      Conserved Domains (1) summary
      PRK12678
      Location:148 → 272
      PRK12678; transcription termination factor Rho; Provisional

    10. NM_001267359.3 → NP_001254288.1  Expressed conserved protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254288.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L2A3
      Conserved Domains (1) summary
      PRK12678
      Location:176 → 317
      PRK12678; transcription termination factor Rho; Provisional
    Nucleotide Protein
    Heading Accession and Version

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