U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Fam78a family with sequence similarity 78, member A [ Mus musculus (house mouse) ]

    Gene ID: 241303, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Fam78aprovided by MGI
    Official Full Name
    family with sequence similarity 78, member Aprovided by MGI
    Primary source
    MGI:MGI:2443569
    See related
    Ensembl:ENSMUSG00000050592 Ensembl:ENSMUSG00000090157 AllianceGenome:MGI:2443569
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A130092J06Rik
    Summary
    Is expressed in tongue muscle. Orthologous to human FAM78A (family with sequence similarity 78 member A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in thymus adult (RPKM 46.7), testis adult (RPKM 44.1) and 10 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Fam78a in Genome Data Viewer
    Location:
    2 B; 2 22.0 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (31932720..31977484, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (32045969..32087472, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene nucleoporin 214 Neighboring gene BTG3 associated nuclear protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_04165 Neighboring gene STARR-seq mESC enhancer starr_04166 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31889766-31889967 Neighboring gene predicted gene 13609 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31912916-31913099 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31917796-31918029 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31918647-31918863 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31920488-31920689 Neighboring gene microRNA 7674 Neighboring gene STARR-seq mESC enhancer starr_04167 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:31934202-31934355 Neighboring gene STARR-positive B cell enhancer mm9_chr2:31936748-31937048 Neighboring gene predicted gene, 33126 Neighboring gene phospholipid phosphatase 7 (inactive) Neighboring gene STARR-seq mESC enhancer starr_04169 Neighboring gene VISTA enhancer mm194 Neighboring gene STARR-seq mESC enhancer starr_04172 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:32011222-32011331 Neighboring gene STARR-seq mESC enhancer starr_04177 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:32023467-32023668 Neighboring gene proline-rich coiled-coil 2B Neighboring gene STARR-seq mESC enhancer starr_04183 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:32036927-32037171 Neighboring gene predicted gene, 22192

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein FAM78A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399461.1 → NP_001386390.1  protein FAM78A

      Status: VALIDATED

      Source sequence(s)
      AL928893
      UniProtKB/Swiss-Prot
      Q8C552
      UniProtKB/TrEMBL
      A2ATN4
      Related
      ENSMUSP00000115010.2, ENSMUST00000139629.2

    2. NM_175511.5 → NP_780720.1  protein FAM78A

      See identical proteins and their annotated locations for NP_780720.1

      Status: VALIDATED

      Source sequence(s)
      AL928893
      Consensus CDS
      CCDS15905.1
      UniProtKB/Swiss-Prot
      Q8C552
      UniProtKB/TrEMBL
      A2ATN4
      Related
      ENSMUSP00000052826.7, ENSMUST00000056406.7

    RNA

    1. NR_151493.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL928893

    2. NR_151494.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL928893

    3. NR_151495.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK041512, AK165375
      Related
      ENSMUST00000149300.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      31932720..31977484 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011239099.1 → XP_011237401.1  protein FAM78A isoform X1

      See identical proteins and their annotated locations for XP_011237401.1

      UniProtKB/Swiss-Prot
      Q8C552
      UniProtKB/TrEMBL
      A2ATN4

    2. XM_030251002.1 → XP_030106862.1  protein FAM78A isoform X2

    RNA

    1. XR_003952794.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8C552.1 GenPept UniProtKB/Swiss-Prot:Q8C552

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools