U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ssp6 short spindle 6 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 38694, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ssp6provided by FlyBase
    Official Full Name
    short spindle 6provided by FlyBase
    Primary source
    FLYBASE:FBgn0035676
    Locus tag
    Dmel_CG6619
    See related
    AllianceGenome:FB:FBgn0035676
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG6619; Dmel\CG6619; Ssp6
    Summary
    Is expressed in adult head; embryonic brain; embryonic/larval oenocyte; embryonic/larval visceral tracheal branch; and larval ventral nerve cord. Orthologous to several human genes including CYTIP (cytohesin 1 interacting protein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ssp6 in Genome Data Viewer
    Location:
    65A5-65A5; 3-16 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (6076722..6082491)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (6069822..6075591)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genes involved in centrosome-independent mitotic spindle assembly in Drosophila S2 cells. Moutinho-Pereira S, et al. Proc Natl Acad Sci U S A, 2013 Dec 3. PMID 24255106, Free PMC Article
    2. Genome-wide analysis in Drosophila reveals diet-by-gene interactions and uncovers diet-responsive genes. Francis D, et al. G3 (Bethesda), 2021 Sep 27. PMID 34568906, Free PMC Article
    3. Neurological proteins are not enriched for repetitive sequences. Huntley MA, et al. Genetics, 2004 Mar. PMID 15082536, Free PMC Article
    4. The genetic architecture of odor-guided behavior in Drosophila melanogaster. Anholt RR, et al. Behav Genet, 2001 Jan. PMID 11529271
    5. Identification of novel Drosophila neural precursor genes using a differential embryonic head cDNA screen. Brody T, et al. Mech Dev, 2002 Apr. PMID 11900973

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    short spindle 6
    Names
    CG6619-PA
    CG6619-PB
    ssp6-PA
    ssp6-PB

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      6076722..6082491
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001300023.1 → NP_001286952.1  short spindle 6, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286952.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SXG1, Q9VRT8
      Conserved Domains (1) summary
      cd00992
      Location:130 → 216
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

    2. NM_139766.2 → NP_648023.2  short spindle 6, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648023.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SXG1, Q9VRT8
      Related
      FBpp0076757
      Conserved Domains (1) summary
      cd00992
      Location:130 → 216
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8SXG1 Q8SXG1
    Q9VRT8 Q9VRT8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools