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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001024931.2 → NP_001020102.2 RNA binding protein fox-1 homolog 3 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice junction at the 5' end of an exon and has an alternate 3' UTR and coding sequence compared to variant 1. The resulting isoform (3) lacks an alternate internal segment and is shorter at the C-terminus compared to isoform 1. Variants 3 and 6 both encode the same isoform (3).
- Source sequence(s)
-
AK049926, AK079086, AL591075
- Consensus CDS
-
CCDS25705.1
- UniProtKB/TrEMBL
-
Q8VI61
- Related
- ENSMUSP00000101885.3, ENSMUST00000106278.9
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 298
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
NM_001039167.1 → NP_001034256.1 RNA binding protein fox-1 homolog 3 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AK049926, AK079086, AK160816, AL591075
- Consensus CDS
-
CCDS25706.1
- UniProtKB/Swiss-Prot
- A2A4W7, A2A4W8, B7ZC12, B7ZC13, D1GI07, Q3TUE0, Q7TQI4, Q8BIF2
- UniProtKB/TrEMBL
-
Q8VI61
- Related
- ENSMUSP00000017576.5, ENSMUST00000017576.11
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 345
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
NM_001039168.1 → NP_001034257.1 RNA binding protein fox-1 homolog 3 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice junction at the 5' end of an exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
- Source sequence(s)
-
AK049926, AK079086, AK086669, AL591075
- UniProtKB/Swiss-Prot
-
Q8BIF2
- Conserved Domains (4) summary
-
- COG0724
Location:83 → 231
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- cd12407
Location:98 → 173
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- pfam12414
Location:207 → 297
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
- pfam16000
Location:17 → 80
- CARMIL_C; CARMIL C-terminus
-
NM_001285436.1 → NP_001272365.1 RNA binding protein fox-1 homolog 3 isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) uses an alternate in-frame splice junction at the 5' end of an exon and has an alternate 3' UTR and coding sequence compared to variant 1. The resulting isoform (4) contains an alternate internal segment and is shorter at the C-terminus compared to isoform 1.
- Source sequence(s)
-
AK079086, AK160816, AL591075
- Consensus CDS
-
CCDS70360.1
- UniProtKB/TrEMBL
-
Q8VI61
- Related
- ENSMUSP00000113636.2, ENSMUST00000117731.8
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 345
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
NM_001285437.1 → NP_001272366.1 RNA binding protein fox-1 homolog 3 isoform 5
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, lacks an alternate in-frame exon, and has an alternate 3' UTR and coding sequence compared to variant 1. The resulting isoform (5) lacks an alternate internal segment and is shorter at the C-terminus compared to isoform 1.
- Source sequence(s)
-
AK160816, AL591075, BC054403
- Consensus CDS
-
CCDS70358.1
- UniProtKB/TrEMBL
-
Q8VI61
- Related
- ENSMUSP00000069598.6, ENSMUST00000069343.12
- Conserved Domains (3) summary
-
- COG0724
Location:84 → 133
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- pfam12414
Location:177 → 314
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
- cl17169
Location:99 → 138
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001285438.1 → NP_001272367.1 RNA binding protein fox-1 homolog 3 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR, uses an alternate in-frame splice junction at the 5' end of an exon, and has an alternate 3' UTR and coding sequence compared to variant 1. The resulting isoform (3) lacks an alternate internal segment and is shorter at the C-terminus compared to isoform 1. Variants 3 and 6 both encode the same isoform (3).
- Source sequence(s)
-
AK032676, AK160816, AL591075, BB623084
- Consensus CDS
-
CCDS25705.1
- UniProtKB/TrEMBL
-
Q8VI61
- Related
- ENSMUSP00000099312.2, ENSMUST00000103023.8
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 298
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000077.7 Reference GRCm39 C57BL/6J
- Range
-
118380586..118802423 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_030246136.1 → XP_030101996.1 RNA binding protein fox-1 homolog 3 isoform X5
- Conserved Domains (3) summary
-
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 298
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
-
XM_017314662.2 → XP_017170151.1 RNA binding protein fox-1 homolog 3 isoform X1
- UniProtKB/Swiss-Prot
- A2A4W7, A2A4W8, B7ZC12, B7ZC13, D1GI07, Q3TUE0, Q7TQI4, Q8BIF2
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 345
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
XM_006533726.4 → XP_006533789.1 RNA binding protein fox-1 homolog 3 isoform X2
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:98 → 173
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 169
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:207 → 344
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
XM_006533727.4 → XP_006533790.1 RNA binding protein fox-1 homolog 3 isoform X5
- UniProtKB/Swiss-Prot
-
Q8BIF2
- Related
- ENSMUSP00000113987.2, ENSMUST00000120061.8
- Conserved Domains (3) summary
-
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 298
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
-
XM_030246134.2 → XP_030101994.1 RNA binding protein fox-1 homolog 3 isoform X5
- Conserved Domains (3) summary
-
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 298
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
-
XM_006533722.5 → XP_006533785.1 RNA binding protein fox-1 homolog 3 isoform X1
- UniProtKB/Swiss-Prot
- A2A4W7, A2A4W8, B7ZC12, B7ZC13, D1GI07, Q3TUE0, Q7TQI4, Q8BIF2
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 345
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
XM_036156838.1 → XP_036012731.1 RNA binding protein fox-1 homolog 3 isoform X5
- Conserved Domains (3) summary
-
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 298
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
-
XM_036156840.1 → XP_036012733.1 RNA binding protein fox-1 homolog 3 isoform X5
- Conserved Domains (3) summary
-
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 298
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
-
XM_006533725.5 → XP_006533788.1 RNA binding protein fox-1 homolog 3 isoform X1
- UniProtKB/Swiss-Prot
- A2A4W7, A2A4W8, B7ZC12, B7ZC13, D1GI07, Q3TUE0, Q7TQI4, Q8BIF2
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 345
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
XM_017314661.2 → XP_017170150.1 RNA binding protein fox-1 homolog 3 isoform X1
- UniProtKB/Swiss-Prot
- A2A4W7, A2A4W8, B7ZC12, B7ZC13, D1GI07, Q3TUE0, Q7TQI4, Q8BIF2
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 345
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
XM_030246135.2 → XP_030101995.1 RNA binding protein fox-1 homolog 3 isoform X5
- Conserved Domains (3) summary
-
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 298
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
-
XM_036156839.1 → XP_036012732.1 RNA binding protein fox-1 homolog 3 isoform X5
- Conserved Domains (3) summary
-
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 298
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif (RRM) found in vertebrate RNA binding protein fox-1 homologs and similar proteins
-
XM_030246130.2 → XP_030101990.1 RNA binding protein fox-1 homolog 3 isoform X1
- UniProtKB/Swiss-Prot
- A2A4W7, A2A4W8, B7ZC12, B7ZC13, D1GI07, Q3TUE0, Q7TQI4, Q8BIF2
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 345
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
XM_030246141.1 → XP_030102001.1 RNA binding protein fox-1 homolog 3 isoform X7
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:98 → 173
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 169
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:207 → 297
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
XM_030246139.1 → XP_030101999.1 RNA binding protein fox-1 homolog 3 isoform X6
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 298
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
XM_030246140.1 → XP_030102000.1 RNA binding protein fox-1 homolog 3 isoform X7
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:98 → 173
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 169
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:207 → 297
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
XM_030246133.1 → XP_030101993.1 RNA binding protein fox-1 homolog 3 isoform X4
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:98 → 173
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 169
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:207 → 344
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
XM_017314663.2 → XP_017170152.1 RNA binding protein fox-1 homolog 3 isoform X3
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 345
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
XM_030246137.2 → XP_030101997.1 RNA binding protein fox-1 homolog 3 isoform X6
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 298
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
XM_030246131.2 → XP_030101991.1 RNA binding protein fox-1 homolog 3 isoform X3
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 345
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
XM_030246138.2 → XP_030101998.1 RNA binding protein fox-1 homolog 3 isoform X6
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 298
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal
-
XM_030246132.2 → XP_030101992.1 RNA binding protein fox-1 homolog 3 isoform X3
- UniProtKB/TrEMBL
-
Q8VI61
- Conserved Domains (3) summary
-
- cd12407
Location:99 → 174
- RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
- TIGR01661
Location:25 → 170
- ELAV_HUD_SF; ELAV/HuD family splicing factor
- pfam12414
Location:208 → 345
- Fox-1_C; Calcitonin gene-related peptide regulator C terminal