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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001042707.2 → NP_001036172.1 interleukin enhancer-binding factor 3 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. The encoded isoform (2) is shorter and has a distinct N-terminus, compared to isoform 1. This variant encodes an NFAR-2 isoform that is also known as Ilf3 S.
- Source sequence(s)
-
AF497752, AI415652, BB851524
- Consensus CDS
-
CCDS40552.1
- UniProtKB/Swiss-Prot
- Q80VD5, Q812A1, Q8BP80, Q8C2H8, Q8K588, Q9Z1X4
- Related
- ENSMUSP00000065770.5, ENSMUST00000067646.12
- Conserved Domains (3) summary
-
- smart00572
Location:88 → 342
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- cd19910
Location:398 → 470
- DSRM_ILF3_rpt1; first double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cd19912
Location:520 → 591
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
-
NM_001042708.2 → NP_001036173.1 interleukin enhancer-binding factor 3 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks several 3' exons and contains an alternate 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (3) is shorter and has a distinct C-terminus, compared to isoform 1. This variant encodes an NFAR-1 isoform that is also known as NF90 L.
- Source sequence(s)
-
BB851524, DQ104405
- Consensus CDS
-
CCDS90512.1
- UniProtKB/TrEMBL
-
Q45VK6
- Related
- ENSMUSP00000149786.2, ENSMUST00000216892.2
- Conserved Domains (2) summary
-
- smart00572
Location:101 → 355
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- smart00358
Location:415 → 479
- DSRM; Double-stranded RNA binding motif
-
NM_001042709.2 → NP_001036174.1 interleukin enhancer-binding factor 3 isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an alternate in-frame exon in the 5' coding region, lacks several 3' exons, and contains an alternate 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (4) is shorter and has distinct N- and C-termini, compared to isoform 1. This variant encodes an NFAR-1 isoform that is also known as NF90 S.
- Source sequence(s)
-
BB851524, DQ104406
- Consensus CDS
-
CCDS40553.1
- UniProtKB/TrEMBL
-
Q45VK5
- Related
- ENSMUSP00000111074.2, ENSMUST00000115414.3
- Conserved Domains (2) summary
-
- smart00572
Location:88 → 342
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- smart00358
Location:402 → 466
- DSRM; Double-stranded RNA binding motif
-
NM_001277321.1 → NP_001264250.1 interleukin enhancer-binding factor 3 isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. The encoded isoform (5) is shorter than isoform 1. This variant encodes an NFAR-2 isoform.
- Source sequence(s)
-
AF497751, AI415652, BB851524
- Consensus CDS
-
CCDS90513.1
- UniProtKB/TrEMBL
-
A0A1L1STE4
- Related
- ENSMUSP00000150280.2, ENSMUST00000213518.2
- Conserved Domains (2) summary
-
- smart00572
Location:101 → 355
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- smart00358
Location:415 → 479
- DSRM; Double-stranded RNA binding motif
-
NM_001277322.1 → NP_001264251.1 interleukin enhancer-binding factor 3 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR, compared to variant 1. Both variants 1 and 6 encode the same isoform (1). This variant encodes an NFAR-2 isoform that is also known as Ilf3 L.
- Source sequence(s)
-
AC122525, AF497751, AI415652
- Consensus CDS
-
CCDS90514.1
- UniProtKB/Swiss-Prot
-
Q9Z1X4
- Related
- ENSMUSP00000149483.2, ENSMUST00000213603.2
- Conserved Domains (2) summary
-
- smart00572
Location:101 → 355
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- smart00358
Location:415 → 479
- DSRM; Double-stranded RNA binding motif
-
NM_010561.3 → NP_034691.2 interleukin enhancer-binding factor 3 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1). Both variants 1 and 6 encode the same isoform (1). This variant encodes an NFAR-2 isoform that is also known as Ilf3 L.
- Source sequence(s)
-
AF497751, AI415652, BB851524
- Consensus CDS
-
CCDS90514.1
- UniProtKB/Swiss-Prot
-
Q9Z1X4
- Related
- ENSMUSP00000151032.2, ENSMUST00000214758.2
- Conserved Domains (2) summary
-
- smart00572
Location:101 → 355
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- smart00358
Location:415 → 479
- DSRM; Double-stranded RNA binding motif
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000075.7 Reference GRCm39 C57BL/6J
- Range
-
21278964..21316659
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017313138.3 → XP_017168627.1 interleukin enhancer-binding factor 3 isoform X9
- Conserved Domains (3) summary
-
- smart00572
Location:88 → 342
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- cd19912
Location:464 → 535
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:398 → 460
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_036154622.1 → XP_036010515.1 interleukin enhancer-binding factor 3 isoform X5
- Conserved Domains (3) summary
-
- smart00572
Location:88 → 342
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- cd19910
Location:398 → 470
- DSRM_ILF3_rpt1; first double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cd19912
Location:520 → 591
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
-
XM_017313140.3 → XP_017168629.1 interleukin enhancer-binding factor 3 isoform X12
- Conserved Domains (3) summary
-
- smart00572
Location:88 → 342
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- cd19910
Location:398 → 470
- DSRM_ILF3_rpt1; first double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cd19912
Location:520 → 591
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
-
XM_030244068.2 → XP_030099928.1 interleukin enhancer-binding factor 3 isoform X8
- Conserved Domains (3) summary
-
- smart00572
Location:101 → 355
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- cd19912
Location:477 → 548
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:411 → 473
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_036154621.1 → XP_036010514.1 interleukin enhancer-binding factor 3 isoform X4
- Conserved Domains (3) summary
-
- smart00572
Location:101 → 355
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- cd19910
Location:411 → 483
- DSRM_ILF3_rpt1; first double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cd19912
Location:533 → 604
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
-
XM_017313139.3 → XP_017168628.1 interleukin enhancer-binding factor 3 isoform X11
- Conserved Domains (3) summary
-
- smart00572
Location:101 → 355
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- cd19910
Location:411 → 483
- DSRM_ILF3_rpt1; first double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cd19912
Location:533 → 604
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
-
XM_017313146.3 → XP_017168635.1 interleukin enhancer-binding factor 3 isoform X17
- Conserved Domains (2) summary
-
- cd19912
Location:185 → 256
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:63 → 135
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_036154628.1 → XP_036010521.1 interleukin enhancer-binding factor 3 isoform X19
- Conserved Domains (2) summary
-
- cd19912
Location:129 → 200
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:63 → 125
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_030244069.2 → XP_030099929.1 interleukin enhancer-binding factor 3 isoform X16
- Conserved Domains (3) summary
-
- cl02675
Location:1 → 77
- DZF; DZF domain
- cd19912
Location:255 → 326
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:133 → 205
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_036154626.1 → XP_036010519.1 interleukin enhancer-binding factor 3 isoform X17
- Conserved Domains (2) summary
-
- cd19912
Location:185 → 256
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:63 → 135
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_036154624.1 → XP_036010517.1 interleukin enhancer-binding factor 3 isoform X15
- Conserved Domains (3) summary
-
- cl02675
Location:1 → 163
- DZF; DZF domain
- cd19912
Location:285 → 356
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:219 → 281
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_017313148.3 → XP_017168637.1 interleukin enhancer-binding factor 3 isoform X17
- Conserved Domains (2) summary
-
- cd19912
Location:185 → 256
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:63 → 135
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_036154625.1 → XP_036010518.1 interleukin enhancer-binding factor 3 isoform X16
- Conserved Domains (3) summary
-
- cl02675
Location:1 → 77
- DZF; DZF domain
- cd19912
Location:255 → 326
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:133 → 205
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_017313147.3 → XP_017168636.1 interleukin enhancer-binding factor 3 isoform X17
- Conserved Domains (2) summary
-
- cd19912
Location:185 → 256
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:63 → 135
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_017313143.3 → XP_017168632.1 interleukin enhancer-binding factor 3 isoform X14
- Conserved Domains (3) summary
-
- cl02675
Location:1 → 163
- DZF; DZF domain
- cd19910
Location:219 → 291
- DSRM_ILF3_rpt1; first double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cd19912
Location:341 → 412
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
-
XM_017313145.3 → XP_017168634.1 interleukin enhancer-binding factor 3 isoform X16
- Conserved Domains (3) summary
-
- cl02675
Location:1 → 77
- DZF; DZF domain
- cd19912
Location:255 → 326
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:133 → 205
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_017313150.3 → XP_017168639.1 interleukin enhancer-binding factor 3 isoform X17
- Conserved Domains (2) summary
-
- cd19912
Location:185 → 256
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:63 → 135
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_006510034.5 → XP_006510097.1 interleukin enhancer-binding factor 3 isoform X14
- Conserved Domains (3) summary
-
- cl02675
Location:1 → 163
- DZF; DZF domain
- cd19910
Location:219 → 291
- DSRM_ILF3_rpt1; first double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cd19912
Location:341 → 412
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
-
XM_017313149.3 → XP_017168638.1 interleukin enhancer-binding factor 3 isoform X17
- Conserved Domains (2) summary
-
- cd19912
Location:185 → 256
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:63 → 135
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_006510036.5 → XP_006510099.1 interleukin enhancer-binding factor 3 isoform X16
- Conserved Domains (3) summary
-
- cl02675
Location:1 → 77
- DZF; DZF domain
- cd19912
Location:255 → 326
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:133 → 205
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_017313152.3 → XP_017168641.1 interleukin enhancer-binding factor 3 isoform X17
- Conserved Domains (2) summary
-
- cd19912
Location:185 → 256
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:63 → 135
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_006510037.5 → XP_006510100.1 interleukin enhancer-binding factor 3 isoform X17
- Conserved Domains (2) summary
-
- cd19912
Location:185 → 256
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:63 → 135
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_006510029.5 → XP_006510092.1 interleukin enhancer-binding factor 3 isoform X2
- Conserved Domains (3) summary
-
- smart00572
Location:93 → 347
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- cd19910
Location:403 → 475
- DSRM_ILF3_rpt1; first double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cd19912
Location:525 → 596
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
-
XM_036154627.1 → XP_036010520.1 interleukin enhancer-binding factor 3 isoform X18
- Conserved Domains (2) summary
-
- cd19912
Location:185 → 256
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:63 → 135
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_011242403.4 → XP_011240705.1 interleukin enhancer-binding factor 3 isoform X1
- Conserved Domains (3) summary
-
- smart00572
Location:106 → 360
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- cd19910
Location:416 → 488
- DSRM_ILF3_rpt1; first double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cd19912
Location:538 → 609
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
-
XM_011242404.4 → XP_011240706.1 interleukin enhancer-binding factor 3 isoform X6
- Conserved Domains (3) summary
-
- smart00572
Location:106 → 360
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- cd19912
Location:482 → 553
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cl00054
Location:416 → 478
- DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
-
XM_036154620.1 → XP_036010513.1 interleukin enhancer-binding factor 3 isoform X3
- Conserved Domains (3) summary
-
- smart00572
Location:106 → 360
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- cd19910
Location:416 → 488
- DSRM_ILF3_rpt1; first double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cd19912
Location:538 → 609
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
-
XM_011242405.4 → XP_011240707.1 interleukin enhancer-binding factor 3 isoform X10
- Conserved Domains (3) summary
-
- smart00572
Location:106 → 360
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- cd19910
Location:416 → 488
- DSRM_ILF3_rpt1; first double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cd19912
Location:538 → 609
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
-
XM_017313142.3 → XP_017168631.1 interleukin enhancer-binding factor 3 isoform X14
- Conserved Domains (3) summary
-
- cl02675
Location:1 → 163
- DZF; DZF domain
- cd19910
Location:219 → 291
- DSRM_ILF3_rpt1; first double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cd19912
Location:341 → 412
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
-
XM_036154623.1 → XP_036010516.1 interleukin enhancer-binding factor 3 isoform X7
- Conserved Domains (3) summary
-
- smart00572
Location:93 → 347
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- cd19910
Location:403 → 475
- DSRM_ILF3_rpt1; first double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cd19912
Location:525 → 596
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
-
XM_017313141.3 → XP_017168630.1 interleukin enhancer-binding factor 3 isoform X13
- Conserved Domains (3) summary
-
- smart00572
Location:93 → 347
- DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
- cd19910
Location:403 → 475
- DSRM_ILF3_rpt1; first double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
- cd19912
Location:525 → 596
- DSRM_ILF3_rpt2; second double-stranded RNA binding motif of interleukin enhancer-binding factor 3 (ILF3) and similar proteins
RNA
-
XR_004935330.1 RNA Sequence
-
XR_004935326.1 RNA Sequence
-
XR_003947788.1 RNA Sequence
-
XR_004935329.1 RNA Sequence
-
XR_001778803.3 RNA Sequence
-
XR_004935327.1 RNA Sequence
-
XR_001778804.3 RNA Sequence
-
XR_001778802.3 RNA Sequence
-
XR_004935324.1 RNA Sequence
-
XR_004935325.1 RNA Sequence
-
XR_003947790.2 RNA Sequence
-
XR_003947787.1 RNA Sequence
-
XR_004935328.1 RNA Sequence
-
XR_003947786.2 RNA Sequence
-
XR_004935323.1 RNA Sequence
-
XR_004935322.1 RNA Sequence
-
XR_001778801.3 RNA Sequence