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    Ydjc YdjC homolog (bacterial) [ Mus musculus (house mouse) ]

    Gene ID: 69101, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ydjcprovided by MGI
    Official Full Name
    YdjC homolog (bacterial)provided by MGI
    Primary source
    MGI:MGI:1916351
    See related
    Ensembl:ENSMUSG00000041774 AllianceGenome:MGI:1916351
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1810015A11Rik; 4930521M19Rik
    Summary
    Predicted to enable deacetylase activity and magnesium ion binding activity. Predicted to be involved in carbohydrate metabolic process. Is expressed in several structures, including alimentary system; ovary; and trachea. Orthologous to human YDJC (YdjC chitooligosaccharide deacetylase homolog). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in duodenum adult (RPKM 33.8), colon adult (RPKM 31.0) and 25 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Ydjc in Genome Data Viewer
    Location:
    16 A3; 16 10.63 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (16964813..16966721)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (17146949..17148857)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E214 Neighboring gene stromal cell-derived factor 2-like 1 Neighboring gene Rps20 pseudogene Neighboring gene coiled-coil domain containing 116 Neighboring gene STARR-positive B cell enhancer ABC_E4157 Neighboring gene ubiquitin-conjugating enzyme E2L 3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:17201546-17201655 Neighboring gene predicted gene, 22129

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
    2. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    3. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Gene trapped (1) 
    • Targeted (3) 

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC144470

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables deacetylase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables magnesium ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    carbohydrate deacetylase
    Names
    UPF0249 protein ydjC homolog
    NP_001365723.1
    NP_081216.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001378794.1 → NP_001365723.1  carbohydrate deacetylase isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC154667
      Conserved Domains (1) summary
      cd10806
      Location:7 → 287
      YdjC_like_2; uncharacterized YdjC-like family proteins from eukaryotes

    2. NM_026940.4 → NP_081216.1  carbohydrate deacetylase isoform 1

      See identical proteins and their annotated locations for NP_081216.1

      Status: VALIDATED

      Source sequence(s)
      AC154667, AI642588, AK007503
      Consensus CDS
      CCDS27996.1
      UniProtKB/Swiss-Prot
      Q14BV6, Q8C5Z5, Q9D8Z7
      Related
      ENSMUSP00000069864.5, ENSMUST00000069064.7
      Conserved Domains (1) summary
      cd10806
      Location:7 → 286
      YdjC_like_2; uncharacterized YdjC-like family proteins from eukaryotes

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      16964813..16966721
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q14BV6.2 GenPept UniProtKB/Swiss-Prot:Q14BV6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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