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    Rcd-1r Rcd-1 related [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34229, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Rcd-1rprovided by FlyBase
    Official Full Name
    Rcd-1 relatedprovided by FlyBase
    Primary source
    FLYBASE:FBgn0032089
    Locus tag
    Dmel_CG9573
    See related
    AllianceGenome:FB:FBgn0032089
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG9573; Dmel\CG9573; Drcd-1r; Zeus
    Summary
    Involved in spermatogenesis. Located in nucleus. Is expressed in several structures, including adult descending neurons; brain; gonad; larval central brain; and male germline cell. Orthologous to human CNOT9 (CCR4-NOT transcription complex subunit 9). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Rcd-1r in Genome Data Viewer
    Location:
    29F7-29F7; 2-34 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (9012885..9014068, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (9012885..9014068, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Trypsin 29F Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44352 Neighboring gene uncharacterized protein Neighboring gene Dpr-interacting protein zeta Neighboring gene long non-coding RNA:CR44483

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Intronic gRNAs for the Construction of Minimal Gene Drive Systems. Nash A, et al. Front Bioeng Biotechnol, 2022. PMID 35646834, Free PMC Article
    2. Development of synthetic selfish elements based on modular nucleases in Drosophila melanogaster. Simoni A, et al. Nucleic Acids Res, 2014 Jun. PMID 24803674, Free PMC Article
    3. Rapid Cis-Trans Coevolution Driven by a Novel Gene Retroposed from a Eukaryotic Conserved CCR4-NOT Component in Drosophila. Krinsky BH, et al. Genes (Basel), 2021 Dec 26. PMID 35052398, Free PMC Article
    4. Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene. Chen S, et al. EMBO J, 2012 Jun 13. PMID 22543869, Free PMC Article
    5. Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification. Arthur RK, et al. Genome Res, 2014 Jul. PMID 24985914, Free PMC Article

    See all (41) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in negative regulation of translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in spermatogenesis IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of CCR4-NOT core complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in P-body IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Rcd-1 related
    Names
    CG9573-PA
    Drcd-1 related
    Rcd-1r-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      9012885..9014068 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_135425.3 → NP_609269.1  Rcd-1 related [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609269.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      E0ZR36, E0ZR38, E0ZR47, Q9VLF2
      Related
      FBpp0079380
      Conserved Domains (1) summary
      pfam04078
      Location:32 → 279
      Rcd1; Cell differentiation family, Rcd1-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VLF2 Q9VLF2

    Gene LinkOut

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