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    CG11970 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41072, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG11970provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0027503
    Locus tag
    Dmel_CG11970
    See related
    AllianceGenome:FB:FBgn0027503
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:LD23876; Dmel\CG11970
    Summary
    Predicted to enable protease binding activity. Predicted to be part of Ino80 complex. Orthologous to human NFRKB (nuclear factor related to kappaB binding protein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG11970 in Genome Data Viewer
    Location:
    85C1-85C1; 3-48 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (8984718..8990649)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (4810440..4816371)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene ichor Neighboring gene Carbonic anhydrase beta Neighboring gene Ras-related GTP binding A/B Neighboring gene Enhancer of variegation 3-9 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Alcohol Causes Lasting Differential Transcription in Drosophila Mushroom Body Neurons. Petruccelli E, et al. Genetics, 2020 May. PMID 32132098, Free PMC Article
    2. ird1 is a Vps15 homologue important for antibacterial immune responses in Drosophila. Wu J, et al. Cell Microbiol, 2007 Apr. PMID 17166233
    3. E(var)3-9 of Drosophila melanogaster encodes a zinc finger protein. Weiler KS. Genetics, 2007 Sep. PMID 17660546, Free PMC Article
    4. Identification of common and cell type specific LXXLL motif EcR cofactors using a bioinformatics refined candidate RNAi screen in Drosophila melanogaster cell lines. Davis MB, et al. BMC Dev Biol, 2011 Nov 3. PMID 22050674, Free PMC Article
    5. Spatial expression of transcription factors in Drosophila embryonic organ development. Hammonds AS, et al. Genome Biol, 2013 Dec 20. PMID 24359758, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables protease binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of Ino80 complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG11970-PA
    CG11970-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      8984718..8990649
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001300314.1 → NP_001287243.1  uncharacterized protein Dmel_CG11970, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287243.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9Y0Z1
      Conserved Domains (2) summary
      pfam13919
      Location:129 → 219
      ASXH; Asx homology domain
      pfam14465
      Location:567 → 669
      NFRKB_winged; NFRKB Winged Helix-like

    2. NM_141594.2 → NP_649851.1  uncharacterized protein Dmel_CG11970, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_649851.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9Y0Z1
      Related
      FBpp0081439
      Conserved Domains (2) summary
      pfam13919
      Location:129 → 219
      ASXH; Asx homology domain
      pfam14465
      Location:567 → 669
      NFRKB_winged; NFRKB Winged Helix-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9Y0Z1 Q9Y0Z1

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