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    lsb5 protein lsb5 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540327, updated on 18-Sep-2024

    Summary

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    Official Symbol
    lsb5
    Official Full Name
    protein lsb5
    Primary source
    PomBase:SPBC31F10.07
    Locus tag
    SPOM_SPBC31F10.07
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See lsb5 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (3762937..3764439)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene glutathione-specific gamma-glutamylcyclotransferase Ggg1 Neighboring gene mediator complex subunit Med17 Neighboring gene protein mug37 Neighboring gene ADP-ribosylation factor Sar1 Neighboring gene ncRNA Neighboring gene mediator complex subunit Med10 Neighboring gene ncRNA Neighboring gene protein Mde2 Neighboring gene armadillo-type fold protein, zf-MYND type zinc finger protein, Mub1-Rad6-Ubr2 ubiquitin ligase complex Mub1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
    2. A genetic screen to discover pathways affecting cohesin function in Schizosaccharomyces pombe identifies chromatin effectors. Chen Z, et al. G3 (Bethesda), 2012 Oct. PMID 23050226, Free PMC Article
    3. Expanded Interactome of the Intrinsically Disordered Protein Dss1. Schenstrøm SM, et al. Cell Rep, 2018 Oct 23. PMID 30355493, Free PMC Article
    4. Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts. Anver S, et al. EMBO Rep, 2014 Aug. PMID 24957674, Free PMC Article
    5. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in actin cortical patch localization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in actin cytoskeleton organization ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in actin filament organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in endocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in actin cortical patch IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cell cortex HDA PubMed 
    is_active_in mitotic spindle pole body HDA PubMed 

    General protein information

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    Preferred Names
    protein lsb5

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      3762937..3764439
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022490.3 → NP_596569.1  protein lsb5 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596569.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P87308
      Conserved Domains (2) summary
      pfam00790
      Location:12 → 145
      VHS; VHS domain
      cd14232
      Location:169 → 246
      GAT_LSB5; GAT domain found in yeast LAS seventeen-binding protein 5 (Lsb5p) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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