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    rsd1 RNA-binding protein Rsd1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542545, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rsd1
    Official Full Name
    RNA-binding protein Rsd1
    Primary source
    PomBase:SPAC19G12.07c
    Locus tag
    SPOM_SPAC19G12.07C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See rsd1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    7
    Sequence:
    Chromosome: I; NC_003424.3 (4053604..4056272, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ureidoglycolate hydrolase Neighboring gene citrate transporter Neighboring gene ncRNA Neighboring gene histone H2A beta Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ER sphingosine hydroxylase Scs7 Neighboring gene tRNA-Leu

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A U1-U2 snRNP interaction network during intron definition. Shao W, et al. Mol Cell Biol, 2012 Jan. PMID 22064476, Free PMC Article
    2. Interacting factors and cellular localization of SR protein-specific kinase Dsk1. Tang Z, et al. Exp Cell Res, 2012 Oct 1. PMID 22683458
    3. The proper splicing of RNAi factors is critical for pericentric heterochromatin assembly in fission yeast. Kallgren SP, et al. PLoS Genet, 2014. PMID 24874881, Free PMC Article
    4. Structural and functional characterization of the N terminus of Schizosaccharomyces pombe Cwf10. Livesay SB, et al. Eukaryot Cell, 2013 Nov. PMID 24014766, Free PMC Article
    5. Systematic two-hybrid and comparative proteomic analyses reveal novel yeast pre-mRNA splicing factors connected to Prp19. Ren L, et al. PLoS One, 2011 Feb 28. PMID 21386897, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables RNA binding NAS
    Non-traceable Author Statement
    more info
    		  
    enables U1 snRNP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables U1 snRNP binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome EXP
    Inferred from Experiment
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in nucleus HDA PubMed 
    part_of spliceosomal complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein Rsd1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      4053604..4056272 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019851.3 → NP_594422.2  RNA-binding protein Rsd1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594422.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O13845
      Conserved Domains (4) summary
      cd12283
      Location:241 → 313
      RRM1_RBM39_like; RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
      cd12284
      Location:342 → 413
      RRM2_RBM23_RBM39; RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins
      cd12285
      Location:505 → 589
      RRM3_RBM39_like; RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
      pfam15519
      Location:476 → 523
      RBM39linker; linker between RRM2 and RRM3 domains in RBM39 protein
    Nucleotide Protein
    Heading Accession and Version

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