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    utp23 rRNA processing protein Utp23 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539158, updated on 18-Sep-2024

    Summary

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    Official Symbol
    utp23
    Official Full Name
    rRNA processing protein Utp23
    Primary source
    PomBase:SPCC18.12c
    Locus tag
    SPOM_SPCC18.12C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See utp23 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Sequence:
    Chromosome: III; NC_003421.2 (1977107..1978532, complement)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pyridoxine-pyridoxal-pyridoxamine kinase Neighboring gene ncRNA Neighboring gene Set1C complex and Lid2 complex subunit, Dpy-30 domain Sdc1 Neighboring gene tRNA (guanine-N7-)-methyltransferase subunit Trm82 Neighboring gene ncRNA Neighboring gene 60S ribosomal protein uL10 Neighboring gene uncharacterized protein Neighboring gene WD repeat-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Clr4/Suv39 and RNA quality control factors cooperate to trigger RNAi and suppress antisense RNA. Zhang K, et al. Science, 2011 Mar 25. PMID 21436456, Free PMC Article
    2. Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome. Telekawa C, et al. Nucleic Acids Res, 2018 Nov 30. PMID 30321377, Free PMC Article
    3. Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. Egan ED, et al. RNA, 2014 Jun. PMID 24713849, Free PMC Article
    4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables RNA nuclease activity ISM
    Inferred from Sequence Model
    more info
    		  
    enables small ribosomal subunit rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in rRNA processing ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus HDA PubMed 
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    rRNA processing protein Utp23

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      1977107..1978532 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023382.3 → NP_588391.1  rRNA processing protein Utp23 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_588391.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O74862
      Conserved Domains (1) summary
      cd09865
      Location:4 → 150
      PIN_Utp23; PIN domain of rRNA-processing protein, Utp23 (YOR004W), and other fungal homologs
    Nucleotide Protein
    Heading Accession and Version

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