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    ubi1 ubiquitin-60S ribosomal protein L40 fusion protein [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541768, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ubi1
    Official Full Name
    ubiquitin-60S ribosomal protein L40 fusion protein
    Primary source
    PomBase:SPAC11G7.04
    Locus tag
    SPOM_SPAC11G7.04
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See ubi1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (3968996..3969558)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene HECT-type ubiquitin-protein ligase E3 Pub1 Neighboring gene isocitrate dehydrogenase (NAD+) subunit 1 Idh1 Neighboring gene ncRNA Neighboring gene S-malonyltransferase Mct1 Neighboring gene protein Mug132 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Involvement of rhp23, a Schizosaccharomyces pombe homolog of the human HHR23A and Saccharomyces cerevisiae RAD23 nucleotide excision repair genes, in cell cycle control and protein ubiquitination. Elder RT, et al. Nucleic Acids Res, 2002 Jan 15. PMID 11788722, Free PMC Article
    2. E3 ubiquitin ligase Pub1 is implicated in endocytosis of a GPI-anchored protein Ecm33 in fission yeast. Fang Y, et al. PLoS One, 2014. PMID 24454826, Free PMC Article
    3. The exocyst subunit Sec3 is regulated by a protein quality control pathway. Kampmeyer C, et al. J Biol Chem, 2017 Sep 15. PMID 28765280, Free PMC Article
    4. Promoter nucleosome dynamics regulated by signalling through the CTD code. Materne P, et al. Elife, 2015 Jun 22. PMID 26098123, Free PMC Article
    5. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables protein tag activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables ubiquitin protein ligase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasmic translation ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in modification-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein ubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in ribosome biogenesis ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin-60S ribosomal protein L40 fusion protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      3968996..3969558
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019821.3 → NP_594398.1  ubiquitin-60S ribosomal protein L40 fusion protein [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594398.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O13697, O14257, P0C014, P0C015, P0CH06, P0CH07, Q76PD0, Q9HDZ4
      Conserved Domains (3) summary
      cd01803
      Location:1 → 76
      Ubiquitin; Ubiquitin
      smart00213
      Location:1 → 72
      UBQ; Ubiquitin homologues
      pfam01020
      Location:78 → 126
      Ribosomal_L40e; Ribosomal L40e family
    Nucleotide Protein
    Heading Accession and Version

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