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    LDO16 Ldo16p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 855179, updated on 9-Dec-2024

    Summary

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    Official Symbol
    LDO16
    Official Full Name
    Ldo16p
    Primary source
    SGD:S000004756
    Locus tag
    YMR148W
    See related
    AllianceGenome:SGD:S000004756; FungiDB:YMR148W; VEuPathDB:YMR148W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    OSW5
    Summary
    Involved in ascospore wall assembly and lipid droplet organization. Is active in lipid droplet. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See LDO16 in Genome Data Viewer
    Location:
    chromosome: XIII
    Exon count:
    1
    Sequence:
    Chromosome: XIII; NC_001145.3 (560366..560812)

    Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene NADH-ubiquinone reductase (H(+)-translocating) NDE1 Neighboring gene translation initiation factor eIF3 subunit i Neighboring gene Ldo45p Neighboring gene dolichyl-diphosphooligosaccharide-protein glycotransferase Neighboring gene endopeptidase catalytic subunit IMP1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001145.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing. Yassour M, et al. Proc Natl Acad Sci U S A, 2009 Mar 3. PMID 19208812, Free PMC Article
    2. LDO proteins and Vac8 form a vacuole-lipid droplet contact site to enable starvation-induced lipophagy in yeast. Álvarez-Guerra I, et al. Dev Cell, 2024 Mar 25. PMID 38354739
    3. A metabolically controlled contact site between vacuoles and lipid droplets in yeast. Diep DTV, et al. Dev Cell, 2024 Mar 25. PMID 38367622
    4. Identification of seipin-linked factors that act as determinants of a lipid droplet subpopulation. Eisenberg-Bord M, et al. J Cell Biol, 2018 Jan 2. PMID 29187527, Free PMC Article
    5. Regulation of lipid droplets by metabolically controlled Ldo isoforms. Teixeira V, et al. J Cell Biol, 2018 Jan 2. PMID 29187528, Free PMC Article

    See all (32) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables protein-containing complex binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ascospore wall assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in lipid droplet organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in sporulation resulting in formation of a cellular spore IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in lipid droplet IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in lipid droplet IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Ldo16p
    NP_013868.1
    • hypothetical protein with possible role in spore wall assembly; predicted to contain an N-terminal transmembrane domain; osw5 null mutant spores exhibit increased spore wall permeability and sensitivity to beta-glucanase digestion

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001145.3 Reference assembly

      Range
      560366..560812
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001182650.1 → NP_013868.1  TPA: Ldo16p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_013868.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A6ZMK7, B3LM36, C7GQ88, C8ZF05, D6VZX0, P40219
      UniProtKB/TrEMBL
      G2WKJ9, N1NYV1
      Conserved Domains (1) summary
      pfam17062
      Location:6 → 74
      Osw5; Outer spore wall 5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P40219.1

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