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    pac1 double-strand-specific ribonuclease Pac1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540084, updated on 18-Sep-2024

    Summary

    Official Symbol
    pac1
    Official Full Name
    double-strand-specific ribonuclease Pac1
    Primary source
    PomBase:SPBC119.11c
    Locus tag
    SPOM_SPBC119.11C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    hcs; rnt1; snm1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See pac1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (737503..738826, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene asparagine synthetase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene golgin protein Rud3

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables RNA stem-loop binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables double-stranded RNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables double-stranded RNA-specific ribonuclease activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables double-stranded RNA-specific ribonuclease activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables rDNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables ribonuclease III activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables ribonuclease III activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in RNA metabolic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in U2 snRNA 3'-end processing IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in U2 snRNA 3'-end processing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in U4 snRNA 3'-end processing IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in U4 snRNA 3'-end processing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in box C/D sno(s)RNA 5'-end processing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in nuclear-transcribed mRNA catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in rRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in rRNA processing IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in termination of RNA polymerase II transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in termination of RNA polymerase II transcription, exosome-dependent IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    double-strand-specific ribonuclease Pac1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      737503..738826 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021199.3NP_595292.1  double-strand-specific ribonuclease Pac1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595292.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P22192, Q4JFF8, Q670L9
      UniProtKB/TrEMBL
      Q152U6
      Conserved Domains (3) summary
      smart00358
      Location:291354
      DSRM; Double-stranded RNA binding motif
      COG0571
      Location:136359
      Rnc; dsRNA-specific ribonuclease [Transcription]
      cd00593
      Location:141282
      RIBOc; RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in ...