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    alp11 tubulin-specific chaperone cofactor B [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542814, updated on 18-Sep-2024

    Summary

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    Official Symbol
    alp11
    Official Full Name
    tubulin-specific chaperone cofactor B
    Primary source
    PomBase:SPAC13D6.05
    Locus tag
    SPOM_SPAC13D6.05
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    SPAC4G9.01
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    Genomic context

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    See alp11 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (2253383..2254440)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene tRNA (uridine) methyltransferase trm9 Neighboring gene ubiquitin ligase Btb3 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ribonuclease H2 complex subunit Rnh201 Neighboring gene cleavage and polyadenylation specificity factor Neighboring gene adenylate kinase Adk1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A conserved small GTP-binding protein Alp41 is essential for the cofactor-dependent biogenesis of microtubules in fission yeast. Radcliffe PA, et al. FEBS Lett, 2000 Feb 18. PMID 10683446
    2. Functional dissection and hierarchy of tubulin-folding cofactor homologues in fission yeast. Radcliffe PA, et al. Mol Biol Cell, 1999 Sep. PMID 10473641, Free PMC Article
    3. Identification of novel temperature-sensitive lethal alleles in essential beta-tubulin and nonessential alpha 2-tubulin genes as fission yeast polarity mutants. Radcliffe P, et al. Mol Biol Cell, 1998 Jul. PMID 9658169, Free PMC Article
    4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables microtubule plus-end binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic microtubule organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in cytoplasmic microtubule organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in tubulin complex assembly ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cell cortex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in cytosol HDA PubMed 
    is_active_in microtubule plus-end IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    tubulin-specific chaperone cofactor B

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      2253383..2254440
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019115.3 → NP_593683.2  tubulin-specific chaperone cofactor B [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_593683.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q10235, Q9UTM6
      Conserved Domains (3) summary
      smart00213
      Location:4 → 81
      UBQ; Ubiquitin homologues
      pfam01302
      Location:155 → 220
      CAP_GLY; CAP-Gly domain
      cl00155
      Location:4 → 86
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein
    Heading Accession and Version

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