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    sdc1 Set1C complex and Lid2 complex subunit, Dpy-30 domain Sdc1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539145, updated on 14-Nov-2024

    Summary

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    Official Symbol
    sdc1
    Official Full Name
    Set1C complex and Lid2 complex subunit, Dpy-30 domain Sdc1
    Primary source
    PomBase:SPCC18.11c
    Locus tag
    SPOM_SPCC18.11C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    dpy30
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    Genomic context

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    See sdc1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    2
    Sequence:
    Chromosome: III; NC_003421.2 (1975472..1976696, complement)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene aprataxin-like protein Neighboring gene lysine--tRNA (Lys) ligase Neighboring gene ncRNA Neighboring gene pyridoxine-pyridoxal-pyridoxamine kinase Neighboring gene ncRNA Neighboring gene rRNA processing protein Utp23 Neighboring gene tRNA (guanine-N7-)-methyltransferase subunit Trm82

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Histone H2B ubiquitylation promotes activity of the intact Set1 histone methyltransferase complex in fission yeast. Racine A, et al. J Biol Chem, 2012 Jun 1. PMID 22505722, Free PMC Article
    2. High conservation of the Set1/Rad6 axis of histone 3 lysine 4 methylation in budding and fission yeasts. Roguev A, et al. J Biol Chem, 2003 Mar 7. PMID 12488447
    3. A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Roguev A, et al. Mol Cell Proteomics, 2004 Feb. PMID 14617822
    4. Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. Egan ED, et al. RNA, 2014 Jun. PMID 24713849, Free PMC Article
    5. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription initiation-coupled chromatin remodeling IC
    Inferred by Curator
    more info
    		  
    Component Evidence Code Pubs
    part_of Lid2 complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of Set1C/COMPASS complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in chromatin IC
    Inferred by Curator
    more info
    		 PubMed 
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    Set1C complex and Lid2 complex subunit, Dpy-30 domain Sdc1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      1975472..1976696 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023381.3 → NP_588390.1  Set1C complex and Lid2 complex subunit, Dpy-30 domain Sdc1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_588390.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O74861
      Conserved Domains (1) summary
      pfam05186
      Location:6 → 47
      Dpy-30; Dpy-30 motif
    Nucleotide Protein
    Heading Accession and Version

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