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    shg1 Set1C complex subunit Shg1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 3361506, updated on 18-Sep-2024

    Summary

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    Official Symbol
    shg1
    Official Full Name
    Set1C complex subunit Shg1
    Primary source
    PomBase:SPAC17G8.09
    Locus tag
    SPOM_SPAC17G8.09
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See shg1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    3
    Sequence:
    Chromosome: I; NC_003424.3 (2357319..2358388)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene GDT1-like protein Neighboring gene ncRNA Neighboring gene mitotic spindle checkpoint ubiquitin ligase Dma1 Neighboring gene ncRNA Neighboring gene mannosyltransferase Imt3 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Histone H2B ubiquitylation promotes activity of the intact Set1 histone methyltransferase complex in fission yeast. Racine A, et al. J Biol Chem, 2012 Jun 1. PMID 22505722, Free PMC Article
    2. High conservation of the Set1/Rad6 axis of histone 3 lysine 4 methylation in budding and fission yeasts. Roguev A, et al. J Biol Chem, 2003 Mar 7. PMID 12488447
    3. A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Roguev A, et al. Mol Cell Proteomics, 2004 Feb. PMID 14617822
    4. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article
    5. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription initiation-coupled chromatin remodeling IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in chromatin IC
    Inferred by Curator
    more info
    		 PubMed 
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    Set1C complex subunit Shg1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      2357319..2358388
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019163.3 → NP_001018248.2  Set1C complex subunit Shg1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_001018248.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q10321, Q7Z989
      Conserved Domains (1) summary
      pfam05205
      Location:11 → 108
      COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
    Nucleotide Protein
    Heading Accession and Version

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