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    LINC02384 long intergenic non-protein coding RNA 2384 [ Homo sapiens (human) ]

    Gene ID: 100507195, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02384provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2384provided by HGNC
    Primary source
    HGNC:HGNC:53308
    See related
    AllianceGenome:HGNC:53308
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in lymph node (RPKM 2.3), appendix (RPKM 1.2) and 14 other tissues See more
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    Genomic context

    See LINC02384 in Genome Data Viewer
    Location:
    12q15
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (68431842..68451484, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (68411395..68431035, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (68825622..68845264, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene Mdm1 nuclear protein Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6634 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4646 Neighboring gene uncharacterized LOC105369819 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:68752044-68752555 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:68758482-68759004 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:68759005-68759526 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6636 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:68795808-68797007 Neighboring gene Sharpr-MPRA regulatory region 8569 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6637 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6638 Neighboring gene small integral membrane protein 3-like Neighboring gene proteasome 26S subunit, ATPase, 6 pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    General gene information

    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120458.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC008033

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      68431842..68451484 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      68411395..68431035 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)