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    MIR31HG MIR31 host gene [ Homo sapiens (human) ]

    Gene ID: 554202, updated on 10-Dec-2024

    Summary

    Official Symbol
    MIR31HGprovided by HGNC
    Official Full Name
    MIR31 host geneprovided by HGNC
    Primary source
    HGNC:HGNC:37187
    See related
    Ensembl:ENSG00000171889 MIM:616356; AllianceGenome:HGNC:37187
    Gene type
    ncRNA
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LncHIFCAR; hsa-lnc-31
    Summary
    This gene produces a long non-coding RNA that acts as a host gene for miR-31. This transcript may be involved in cellular pluripotency and regulate the differentiation of myoblasts and other tissues. This RNA was found to interact with Polycomb repressive proteins to repression transcription of genes involves in cell senescence. [provided by RefSeq, Dec 2017]
    Expression
    Biased expression in urinary bladder (RPKM 2.2), small intestine (RPKM 1.0) and 9 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See MIR31HG in Genome Data Viewer
    Location:
    9p21.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (21454268..21559798, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (21468440..21573988, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (21454267..21559797, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene interferon omega 1 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19807 Neighboring gene interferon alpha 1 Neighboring gene interferon omega 1 pseudogene 19 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:21487279-21487868 Neighboring gene NANOG hESC enhancer GRCh37_chr9:21504841-21505376 Neighboring gene interferon epsilon Neighboring gene small nucleolar RNA SNORD55/SNORD39 Neighboring gene microRNA 31 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:21558572-21559358 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19808 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_107244 Neighboring gene H3 histone pseudogene 30 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:21684484-21685683 Neighboring gene uncharacterized LOC107987026 Neighboring gene RNA, 7SL, cytoplasmic 151, pseudogene Neighboring gene KH-type splicing regulatory protein pseudogene 1

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    THOC5: a novel gene involved in HDL-cholesterol metabolism.
    EBI GWAS Catalog

    General gene information

    Markers

    Other Names

    • MIR31 host gene (non-protein coding)
    • long noncoding HIF-1I+/- co-activating RNA
    • long noncoding HIF-1alpha co-activating RNA

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027054.2 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AK124391, BX363267, CA440917, HY159738
      Related
      ENST00000304425.4
    2. NR_152877.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL137022, AL353732
      Related
      ENST00000805438.1
    3. NR_152878.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL137022, AL353732
      Related
      ENST00000663833.2
    4. NR_152879.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AL137022, AL353732
      Related
      ENST00000670459.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      21454268..21559798 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      21468440..21573988 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)