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    LINC01344 long intergenic non-protein coding RNA 1344 [ Homo sapiens (human) ]

    Gene ID: 400799, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC01344provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1344provided by HGNC
    Primary source
    HGNC:HGNC:50554
    See related
    AllianceGenome:HGNC:50554
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GS1-122H1.2
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01344 in Genome Data Viewer
    Location:
    1q25.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (182203945..182314061, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (181560598..181673660, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (182173080..182283196, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371642 Neighboring gene Sharpr-MPRA regulatory region 10342 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:182112509-182112685 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:182112694-182113362 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:182113363-182114030 Neighboring gene YPEL5 pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:182199023-182199595 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:182218347-182218848 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:182231616-182231824 Neighboring gene FOXA motif-containing MPRA enhancer 10/11 Neighboring gene Sharpr-MPRA regulatory region 4291 Neighboring gene NANOG hESC enhancer GRCh37_chr1:182270844-182271361 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1617 Neighboring gene RNA, U6 small nuclear 152, pseudogene Neighboring gene ribosomal protein L18 pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104175.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX096536

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      182203945..182314061 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      181560598..181673660 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)