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    LYPD9P LY6/PLAUR domain containing 9, pseudogene [ Homo sapiens (human) ]

    Gene ID: 101928226, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LYPD9Pprovided by HGNC
    Official Full Name
    LY6/PLAUR domain containing 9, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:53735
    See related
    AllianceGenome:HGNC:53735
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 3.7) See more
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    Genomic context

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    See LYPD9P in Genome Data Viewer
    Location:
    1q44
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (248697062..248699110)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (248135311..248137359)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (248860363..248862411)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 2 subfamily T member 35 (gene/pseudogene) Neighboring gene olfactory receptor family 2 subfamily T member 27 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:248839638-248840292 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:248840293-248840946 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2872 Neighboring gene olfactory receptor family 14 subfamily I member 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2873 Neighboring gene adenosylhomocysteinase pseudogene 8 Neighboring gene uncharacterized LOC107985747 Neighboring gene LY6/PLAUR domain containing 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125950.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI016270, DY654363

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      248697062..248699110
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      248135311..248137359
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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