U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ntsr1 neurotensin receptor 1 [ Mus musculus (house mouse) ]

    Gene ID: 18216, updated on 27-Nov-2024

    Summary

    Official Symbol
    Ntsr1provided by MGI
    Official Full Name
    neurotensin receptor 1provided by MGI
    Primary source
    MGI:MGI:97386
    See related
    Ensembl:ENSMUSG00000027568 AllianceGenome:MGI:97386
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    NTR1; NT-1R; NTR-1
    Summary
    Predicted to enable G protein-coupled neurotensin receptor activity and identical protein binding activity. Acts upstream of or within adult locomotory behavior. Predicted to be located in several cellular components, including dendrite; perikaryon; and symmetric synapse. Predicted to be active in plasma membrane. Is expressed in several structures, including central nervous system; eye; gallbladder; intestine; and male reproductive gland or organ. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human NTSR1 (neurotensin receptor 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in CNS E18 (RPKM 4.6), genital fat pad adult (RPKM 1.5) and 10 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Ntsr1 in Genome Data Viewer
    Location:
    2 H4; 2 103.04 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (180141769..180186772)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (180499976..180544979)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene Mir1a-1 and Mir133a-2 host gene Neighboring gene microRNA 133a-2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:180171931-180172146 Neighboring gene STARR-positive B cell enhancer mm9_chr2:180178418-180178718 Neighboring gene STARR-seq mESC enhancer starr_06732 Neighboring gene solute carrier organic anion transporter family, member 4a1 Neighboring gene predicted gene, 30144 Neighboring gene STARR-positive B cell enhancer ABC_E9543 Neighboring gene STARR-positive B cell enhancer ABC_E4530 Neighboring gene MRG/MORF4L binding protein Neighboring gene opioid growth factor receptor

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables G protein-coupled neurotensin receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables G protein-coupled neurotensin receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables G protein-coupled neurotensin receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables neuropeptide receptor activity TAS
    Traceable Author Statement
    more info
    PubMed 
    enables protein-containing complex binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein-containing complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in D-aspartate import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in D-aspartate import across plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in L-glutamate import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in L-glutamate import across plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within adult locomotory behavior IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in detection of temperature stimulus involved in sensory perception of pain IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in detection of temperature stimulus involved in sensory perception of pain ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in inositol phosphate catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in inositol phosphate catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in learning IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in learning ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of apoptotic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of release of sequestered calcium ion into cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of release of sequestered calcium ion into cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of systemic arterial blood pressure IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of systemic arterial blood pressure ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in neuropeptide signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in neuropeptide signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in neuropeptide signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of arachidonate secretion IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of arachidonate secretion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of gamma-aminobutyric acid secretion IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of gamma-aminobutyric acid secretion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of positive regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of glutamate secretion IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of glutamate secretion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of inhibitory postsynaptic potential IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of inhibitory postsynaptic potential ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of inositol phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of inositol phosphate biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of release of sequestered calcium ion into cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of release of sequestered calcium ion into cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of membrane depolarization IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of membrane depolarization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of respiratory gaseous exchange IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of respiratory gaseous exchange ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to lipid IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to lipid ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in temperature homeostasis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in temperature homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in axon ISO
    Inferred from Sequence Orthology
    more info
     
    located_in axon terminus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasmic side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasmic side of plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dendritic shaft IEA
    Inferred from Electronic Annotation
    more info
     
    located_in dendritic shaft ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dendritic spine IEA
    Inferred from Electronic Annotation
    more info
     
    located_in dendritic spine ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane raft ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane raft ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in neuron spine ISO
    Inferred from Sequence Orthology
    more info
     
    located_in neuronal cell body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in perikaryon IEA
    Inferred from Electronic Annotation
    more info
     
    located_in perikaryon ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in symmetric synapse IEA
    Inferred from Electronic Annotation
    more info
     
    located_in symmetric synapse ISO
    Inferred from Sequence Orthology
    more info
     
    located_in terminal bouton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in terminal bouton ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    neurotensin receptor type 1
    Names
    NT-R-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_018766.2NP_061236.1  neurotensin receptor type 1

      See identical proteins and their annotated locations for NP_061236.1

      Status: PROVISIONAL

      Source sequence(s)
      AB017027
      Consensus CDS
      CCDS17177.1
      UniProtKB/Swiss-Prot
      O88319
      UniProtKB/TrEMBL
      A2ACT4
      Related
      ENSMUSP00000029084.3, ENSMUST00000029084.9
      Conserved Domains (1) summary
      pfam00001
      Location:80369
      7tm_1; 7 transmembrane receptor (rhodopsin family)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      180141769..180186772
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)