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    rcbtb1.S regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 414496, updated on 4-Jan-2025

    Summary

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    Official Symbol
    rcbtb1.S
    Official Full Name
    regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 S homeolog
    Primary source
    Xenbase:XB-GENE-987321
    Locus tag
    XELAEV_18016113mg
    See related
    EnsemblRapid:ENSXLAG00005031026 AllianceGenome:Xenbase:XB-GENE-987321
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    rcbtb1; rcbtb1-a
    Summary
    Orthologous to human RCBTB1 (RCC1 and BTB domain containing protein 1). [provided by Alliance of Genome Resources, Jan 2025]
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See rcbtb1.S in Genome Data Viewer
    Location:
    chromosome: 2S
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (140991503..141012145, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (132006390..132027100, complement)

    Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100127287 Neighboring gene PHD finger protein 11 Neighboring gene ARF like GTPase 11 S homeolog Neighboring gene EBP like S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC81035

    General protein information

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    Preferred Names
    regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 S homeolog
    Names
    regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001091080.1 → NP_001084549.2  regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 S homeolog

      Status: PROVISIONAL

      Source sequence(s)
      BC068656
      UniProtKB/TrEMBL
      A0A8J0PUU2, A0A974HX18
      Related
      ENSXLAP00005092973.1, ENSXLAT00005094656.1
      Conserved Domains (4) summary
      smart00225
      Location:440 → 536
      BTB; Broad-Complex, Tramtrack and Bric a brac
      cd14821
      Location:536 → 592
      SPOP_C_like; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
      pfam00415
      Location:163 → 213
      RCC1; Regulator of chromosome condensation (RCC1) repeat
      pfam00651
      Location:429 → 533
      BTB; BTB/POZ domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      140991503..141012145 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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