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    SED1 Sed1p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 851649, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SED1
    Official Full Name
    Sed1p
    Primary source
    SGD:S000002484
    Locus tag
    YDR077W
    See related
    AllianceGenome:SGD:S000002484; FungiDB:YDR077W; VEuPathDB:YDR077W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    A structural constituent of cell wall. Involved in fungal-type cell wall organization and mitochondrial genome maintenance. Located in fungal-type cell wall; mitochondrion; and ribosome. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SED1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    1
    Sequence:
    Chromosome: IV; NC_001136.10 (600793..601809)

    Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene phosphoprotein phosphatase PP4 catalytic subunit PPH3 Neighboring gene putative DNA-dependent ATPase RAD55 Neighboring gene Shu2p Neighboring gene Pet100p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001136.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SED1 polymorphism within the genus Saccharomyces. Marinangeli P, et al. FEMS Yeast Res, 2004 Oct. PMID 15381124
    2. SED1 gene length and sequence polymorphisms in feral strains of Saccharomyces cerevisiae. Mannazzu I, et al. Appl Environ Microbiol, 2002 Nov. PMID 12406735, Free PMC Article
    3. Resistance Mechanisms of Saccharomyces cerevisiae to Commercial Formulations of Glyphosate Involve DNA Damage Repair, the Cell Cycle, and the Cell Wall Structure. Ravishankar A, et al. G3 (Bethesda), 2020 Jun 1. PMID 32299824, Free PMC Article
    4. Sed1p is a major cell wall protein of Saccharomyces cerevisiae in the stationary phase and is involved in lytic enzyme resistance. Shimoi H, et al. J Bacteriol, 1998 Jul. PMID 9642191, Free PMC Article
    5. Using promoter replacement and selection for loss of heterozygosity to generate an industrially applicable sake yeast strain that homozygously overproduces isoamyl acetate. Sahara H, et al. J Biosci Bioeng, 2009 Nov. PMID 19804856

    See all (56) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables structural constituent of cell wall IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of cell wall IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of cell wall IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fungal-type cell wall organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in fungal-type cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in fungal-type cell wall organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in mitochondrial genome maintenance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell periphery HDA PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in fungal-type cell wall IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in fungal-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in side of membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Sed1p
    NP_010362.3
    • Major stress-induced structural GPI-cell wall glycoprotein; associates with translating ribosomes, possible role in mitochondrial genome maintenance; ORF contains two distinct variable minisatellites; SED1 has a paralog, SPI1, that arose from the whole genome duplication

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001136.10 Reference assembly

      Range
      600793..601809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001180385.3 → NP_010362.3  TPA: Sed1p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_010362.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VS63, Q01589, Q6Q5U8, Q8J057, Q8J270, Q8J271, Q8J272, Q8J273, Q8J274, Q8J275
      UniProtKB/TrEMBL
      B3LGJ3, B5VFX3, N1PAC8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q01589.1

    Gene LinkOut

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