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    Pax1dt paired box 1 divergent transcript [ Mus musculus (house mouse) ]

    Gene ID: 99041, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Pax1dtprovided by MGI
    Official Full Name
    paired box 1 divergent transcriptprovided by MGI
    Primary source
    MGI:MGI:2139024
    See related
    Ensembl:ENSMUSG00000087521 AllianceGenome:MGI:2139024
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Peat; Aspax1; AI646519
    Summary
    Acts upstream of or within gene expression. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in thymus adult (RPKM 2.2), testis adult (RPKM 0.7) and 2 other tissues See more
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    Genomic context

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    See Pax1dt in Genome Data Viewer
    Location:
    2 G2; 2 72.63 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (147203461..147204713, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (147361541..147362793, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene NK2 homeobox 2, opposite strand Neighboring gene predicted gene, 39955 Neighboring gene STARR-seq mESC enhancer starr_05960 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene paired box 1 Neighboring gene STARR-seq mESC enhancer starr_05961 Neighboring gene STARR-seq mESC enhancer starr_05962 Neighboring gene predicted gene, 39956 Neighboring gene predicted gene, 35479

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Undulated short-tail deletion mutation in the mouse ablates Pax1 and leads to ectopic activation of neighboring Nkx2-2 in domains that normally express Pax1. Kokubu C, et al. Genetics, 2003 Sep. PMID 14504237, Free PMC Article
    2. Deletion of the sclerotome-enriched lncRNA PEAT augments ribosomal protein expression. Stafford DA, et al. Proc Natl Acad Sci U S A, 2017 Jan 3. PMID 27986952, Free PMC Article
    3. The I.M.A.G.E. Consortium: an integrated molecular analysis of genomes and their expression. Lennon G, et al. Genomics, 1996 Apr 1. PMID 8617505
    4. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040330.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AB080658, AI430246, AI608217
      Related
      ENSMUST00000140987.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      147203461..147204713 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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